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Report for CCDS56819.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56819.1 Public Mus musculus 11 Slc25a19 23 108 98 CCDS HistoryNCBI Gene:67283Re-query CCDS DB by CCDS ID:56819.1Re-query CCDS DB by GeneID:67283See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56819.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106503.9 ENSMUSP00000102112.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106503.9Link to Ensembl Protein Viewer:ENSMUSP00000102112.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106503Re-query CCDS DB by Protein ID:ENSMUSP00000102112
Original member Current member NCBI NM_001252394.1 NP_001239323.1 Accepted alive Link to Nucleotide Sequence:NM_001252394.1Link to Protein Sequence:NP_001239323.1Re-query CCDS DB by Nucleotide ID:NM_001252394Re-query CCDS DB by Protein ID:NP_001239323Link to BLAST:NP_001239323.1

Chromosomal Locations for CCDS 56819.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115615498 115615591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115616521 115616651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115620877 115621047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115623872 115624027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115624199 115624330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGTTGGCTATGACGCCAAAGCAGATGTCAGGAGTAACTCCAAGTTGGAGGTGGCGGTGGCGGGATCAG
TGTCAGGATTTGTCACCCGTGCCCTGATCAGCCCTTTGGACGTCATCAAGATCCGTTTCCAGCTCCAGAT
TGAACGCCTGTGTCCAAGTGACCCCAATGCCAAATACCACGGAATCTTCCAGGCAGCCAAGCAGATCCTG
CAAGAGGAAGGCCCAAGAGCATTCTGGAAAGGACACGTTCCAGCCCAGATTCTGTCCATAGGCTACGGAG
CTGTCCAATTTTTGGCCTTTGAAGAGTTGACTGAGCTGCTCTACCAAGCCAACTTGTACCAAACGCACCA
GTTCTCAGCGCACTTTGTGTGCGGCGGCCTGTCTGCTGGCACTGCCACCCTCACCGTACACCCTGTGGAC
GTCCTGCGTACCCGCCTTGCCGCTCAGGGCGAGCCCAAGGGAACCTTAAAAACCTGCTTTGTGGCTGTGG
TTCGGGAGTTATCAGCAAGACCTTTACATATCCCCTGGACCTCATCAAGAAGCGCCTGCAGGTGGGCGGG
TTCGAACATGCCCGGTCTGCCTTTGGCCAGGTGCGGAGCTACAGGGGCCTCCTGGACCTCACCCAGCAGG
TACTACAGGAAGAAGGCACCCGGGGCTTCTTCAAGGGCCTGTCCCCCAGCCTGA

Translation (227 aa):
MVGYDAKADVRSNSKLEVAVAGSVSGFVTRALISPLDVIKIRFQLQIERLCPSDPNAKYHGIFQAAKQIL
QEEGPRAFWKGHVPAQILSIGYGAVQFLAFEELTELLYQANLYQTHQFSAHFVCGGLSAGTATLTVHPVD
VLRTRLAAQGEPKGTLKTCFVAVVRELSARPLHIPWTSSRSACRWAGSNMPGLPLARCGATGASWTSPSR
YYRKKAPGASSRACPPA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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