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Report for CCDS16499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16499.1 Public Mus musculus 2 Pax6 23 108 98 CCDS HistoryNCBI Gene:18508Re-query CCDS DB by CCDS ID:16499.1Re-query CCDS DB by GeneID:18508See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090391.12 ENSMUSP00000087870.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090391.12Link to Ensembl Protein Viewer:ENSMUSP00000087870.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090391Re-query CCDS DB by Protein ID:ENSMUSP00000087870
Original member Current member EBI ENSMUST00000111085.7 ENSMUSP00000106714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111085.7Link to Ensembl Protein Viewer:ENSMUSP00000106714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111085Re-query CCDS DB by Protein ID:ENSMUSP00000106714
Original member Current member EBI ENSMUST00000111086.10 ENSMUSP00000106715.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111086.10Link to Ensembl Protein Viewer:ENSMUSP00000106715.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111086Re-query CCDS DB by Protein ID:ENSMUSP00000106715
Original member Current member EBI ENSMUST00000167211.8 ENSMUSP00000129344.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167211.8Link to Ensembl Protein Viewer:ENSMUSP00000129344.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167211Re-query CCDS DB by Protein ID:ENSMUSP00000129344
Original member Current member NCBI NM_001244198.2 NP_001231127.1 Accepted alive Link to Nucleotide Sequence:NM_001244198.2Link to Protein Sequence:NP_001231127.1Re-query CCDS DB by Nucleotide ID:NM_001244198Re-query CCDS DB by Protein ID:NP_001231127Link to BLAST:NP_001231127.1
Original member Current member NCBI NM_001244200.2 NP_001231129.1 Accepted alive Link to Nucleotide Sequence:NM_001244200.2Link to Protein Sequence:NP_001231129.1Re-query CCDS DB by Nucleotide ID:NM_001244200Re-query CCDS DB by Protein ID:NP_001231129Link to BLAST:NP_001231129.1
Original member Current member NCBI NM_013627.6 NP_038655.1 Accepted alive Link to Nucleotide Sequence:NM_013627.6Link to Protein Sequence:NP_038655.1Re-query CCDS DB by Nucleotide ID:NM_013627Re-query CCDS DB by Protein ID:NP_038655Link to BLAST:NP_038655.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001231127.1 436 P63015-2 436 100% 0 0
NP_001231129.1 436 P63015-2 436 100% 0 0
NP_038655.1 436 P63015-2 436 100% 0 0

Chromosomal Locations for CCDS 16499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 105680298 105680307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105683828 105683958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105684751 105684792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105684887 105685102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105685778 105685943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105691565 105691723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692194 105692276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692470 105692620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105692737 105692852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105695306 105695456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 105696270 105696355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGCAGAACAGTCACAGCGGAGTGAATCAGCTTGGTGGTGTCTTTGTCAACGGGCGGCCACTGCCGGACT
CCACCCGGCAGAAGATCGTAGAGCTAGCTCACAGCGGGGCCCGGCCGTGCGACATTTCCCGAATTCTGCA
GACCCATGCAGATGCAAAAGTCCAGGTGCTGGACAATGAAAACGTATCCAACGGTTGTGTGAGTAAAATT
CTGGGCAGGTATTACGAGACTGGCTCCATCAGACCCAGGGCAATCGGAGGGAGTAAGCCAAGAGTGGCGA
CTCCAGAAGTTGTAAGCAAAATAGCCCAGTATAAACGGGAGTGCCCTTCCATCTTTGCTTGGGAAATCCG
AGACAGATTATTATCCGAGGGGGTCTGTACCAACGATAACATACCCAGTGTGTCATCAATAAACAGAGTT
CTTCGCAACCTGGCTAGCGAAAAGCAACAGATGGGCGCAGACGGCATGTATGATAAACTAAGGATGTTGA
ACGGGCAGACCGGAAGCTGGGGCACACGCCCTGGTTGGTATCCCGGGACTTCAGTACCAGGGCAACCCAC
GCAAGATGGCTGCCAGCAACAGGAAGGAGGGGGAGAGAACACCAACTCCATCAGTTCTAACGGAGAAGAC
TCGGATGAAGCTCAGATGCGACTTCAGCTGAAGCGGAAGCTGCAAAGAAATAGAACATCTTTTACCCAAG
AGCAGATTGAGGCTCTGGAGAAAGAGTTTGAGAGGACCCATTATCCAGATGTGTTTGCCCGGGAAAGACT
AGCAGCCAAAATAGATCTACCTGAAGCAAGAATACAGGTATGGTTTTCTAATCGAAGGGCCAAATGGAGA
AGAGAAGAGAAACTGAGGAACCAGAGAAGACAGGCCAGCAACACTCCTAGTCACATTCCTATCAGCAGCA
GCTTCAGTACCAGTGTCTACCAGCCAATCCCACAGCCCACCACACCTGTCTCCTCCTTCACATCAGGTTC
CATGTTGGGCCGAACAGACACCGCCCTCACCAACACGTACAGTGCTTTGCCACCCATGCCCAGCTTCACC
ATGGCAAACAACCTGCCTATGCAACCCCCAGTCCCCAGTCAGACCTCCTCATACTCGTGCATGCTGCCCA
CCAGCCCGTCAGTGAATGGGCGGAGTTATGATACCTACACCCCTCCGCACATGCAAACACACATGAACAG
TCAGCCCATGGGCACCTCGGGGACCACTTCAACAGGACTCATTTCACCTGGAGTGTCAGTTCCCGTCCAA
GTTCCCGGGAGTGAACCTGACATGTCTCAGTACTGGCCTCGATTACAGTAA

Translation (436 aa):
MQNSHSGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQTHADAKVQVLDNENVSNGCVSKI
LGRYYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSVSSINRV
LRNLASEKQQMGADGMYDKLRMLNGQTGSWGTRPGWYPGTSVPGQPTQDGCQQQEGGGENTNSISSNGED
SDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR
REEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPVSSFTSGSMLGRTDTALTNTYSALPPMPSFT
MANNLPMQPPVPSQTSSYSCMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPVQ
VPGSEPDMSQYWPRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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