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Report for CCDS57613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57613.1 Public Mus musculus 8 Alg11 23 108 98 CCDS HistoryNCBI Gene:207958Re-query CCDS DB by CCDS ID:57613.1Re-query CCDS DB by GeneID:207958See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072572.12 ENSMUSP00000072382.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072572.12Link to Ensembl Protein Viewer:ENSMUSP00000072382.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072572Re-query CCDS DB by Protein ID:ENSMUSP00000072382
Original member Current member NCBI NM_001243161.1 NP_001230090.1 Accepted alive Link to Nucleotide Sequence:NM_001243161.1Link to Protein Sequence:NP_001230090.1Re-query CCDS DB by Nucleotide ID:NM_001243161Re-query CCDS DB by Protein ID:NP_001230090Link to BLAST:NP_001230090.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230090.1 492 Q3TZM9-1 492 100% 0 0

Chromosomal Locations for CCDS 57613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22060727 22060770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22061886 22062116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22065000 22065931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22067881 22068152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCGGCGGACACTGGGAGCTGGTGCGTGTACGCCGTGCTGCGGTTTTTCTATTCACTCTTCTTTCCTG
GACTGATGATATGCGGAGTTTTGTGTGTATATTTGGTCATTGGCCTTTGGGTTATCAGGTGGCATCTACA
GAGAAAGAAGAAGTCTGTGTCGACCAGCAAAAATGGAAAAGAACAAACGGTGGTTGCATTTTTCCATCCA
TACTGTAATGCAGGTGGCGGAGGAGAGAGAGTTCTGTGGTGTGCTTTGAGAGCCCTGCAGAAAAAGTATC
CTGAAGCAGTTTATGTTGTATATACTGGTGACATTAATGTCAGTGGTCAACAGATACTAGATGGTGCTTT
CAGAAGGTTTAACATCAAGTTGGCTCACCCAGTGCAGTTTGTTTTCTTAAGGAAACGCTACCTTGTGGAA
GATTCCCGGTATCCTCACTTCACATTGCTAGGCCAAAGTCTTGGATCCATTCTTCTCGGCTGGGAAGCTC
TGATGCAGCGCGTTCCTGATGTTTACATCGACTCAATGGGATACGCCTTCACACTCCCTCTCTTTAAGTA
TGTGGGAGGTTGCCGAGTCGGAAGCTATGTTCACTATCCCACGATCAGCACTGACATGCTGTCTGTGGTG
AAGAATCAGAATCCTGGATTTAATAATGCTGCTTTCATTAGCAGAAATGCTCTTCTCAGCAAAGCAAAGC
TCATCTATTACTATTTATTTGCTTTTGTTTATGGCCTTGTTGGATCTTGCAGTGACATAGTCATGGTTAA
TTCTTCTTGGACATTAAACCATATCCTCTCACTGTGGAAGGTTGGGCATTGCACTAACATTGTCTATCCA
CCTTGTGATGTGCAGACATTTCTGGACATCCCTTTACATGAGAAGAAGGTGACCCCAGGGCATTTGCTGG
TTTCCATTGGCCAGTTCAGACCTGAAAAGAATCATGCTTTGCAGATCAAAGCCTTTGCTAAATTGTTAAA
TGAGAAAGCAGCTGAGTTAGGCCATTCTCTTAAACTTGTCCTTATTGGAGGGTGTCGCAACAAAGATGAT
GAGTTTAGAGTAAACCAACTGAGAAGTCTATCTGAGAATTTGGGAGTTCAAGAAAATGTGGAATTTAAAA
TAAACATTTCATTCGATGAATTGAAGAATTACTTGTCTGAAGCGACCATCGGTCTGCATACTATGTGGAA
TGAGCATTTTGGGATTGGAGTTGTCGAGTGTATGGCAGCTGGCACAGTTATCCTTGCACACAACTCAGGA
GGCCCGAAGCTGGACATTGTCATTCCTCATGAAGGACAGATAACTGGCTTTCTGGCTGAGAGTGAAGAAG
GCTATGCTGACTCTATGGCTCACATTCTTTCTCTGTCTGCAGAAGAGAGACTCCAAATCAGGAAGAATGC
TAGAGCGTCTATAAGCAGATTCTCCGACCAGGAGTTTGAAGTAGCATTCCTGTGTTCCATGGAGAAGTTA
CTTACTTAG

Translation (492 aa):
MAADTGSWCVYAVLRFFYSLFFPGLMICGVLCVYLVIGLWVIRWHLQRKKKSVSTSKNGKEQTVVAFFHP
YCNAGGGGERVLWCALRALQKKYPEAVYVVYTGDINVSGQQILDGAFRRFNIKLAHPVQFVFLRKRYLVE
DSRYPHFTLLGQSLGSILLGWEALMQRVPDVYIDSMGYAFTLPLFKYVGGCRVGSYVHYPTISTDMLSVV
KNQNPGFNNAAFISRNALLSKAKLIYYYLFAFVYGLVGSCSDIVMVNSSWTLNHILSLWKVGHCTNIVYP
PCDVQTFLDIPLHEKKVTPGHLLVSIGQFRPEKNHALQIKAFAKLLNEKAAELGHSLKLVLIGGCRNKDD
EFRVNQLRSLSENLGVQENVEFKINISFDELKNYLSEATIGLHTMWNEHFGIGVVECMAAGTVILAHNSG
GPKLDIVIPHEGQITGFLAESEEGYADSMAHILSLSAEERLQIRKNARASISRFSDQEFEVAFLCSMEKL
LT


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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