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Report for CCDS19548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19548.1 Public Mus musculus 5 Lhfpl7 23 108 98 CCDS HistoryNCBI Gene:333048Re-query CCDS DB by CCDS ID:19548.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19548.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086615.2 ENSMUSP00000083808.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086615.2Link to Ensembl Protein Viewer:ENSMUSP00000083808.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000086615Re-query CCDS DB by Protein ID:ENSMUSP00000083808
Original member Current member NCBI NM_001033428.2 NP_001028600.1 Accepted alive Link to Nucleotide Sequence:NM_001033428.2Link to Protein Sequence:NP_001028600.1Re-query CCDS DB by Nucleotide ID:NM_001033428Re-query CCDS DB by Protein ID:NP_001028600Link to BLAST:NP_001028600.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028600.1 195 Q3UUA0 195 100% 0 0

Chromosomal Locations for CCDS 19548.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113234363 113234563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113235919 113236057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113238029 113238276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGAGGTCGGTGTGAGGGCTGCTCTGGGACTCTCTCTCACCGGCATGTCTGGCCTCAGCCTCATCTCCC
CCGCCTGGTTCCAGAGCCTTTCCTCCTCTTATGGTATCTTTACCTACTGCTCCTGGCCACCAGGTGACTG
CTGGAACCAAAGCTGTGTGACCTTTGGGTCATTGAAGGACATGCCCAGCTTGGCCTGGAAGGTCTCAGCT
GCAACACTTCTGGGAGGCTGGCTTTTGCTGTCAATCAGCGCTCTTCTCCTCTCAGCCTGGGCACTGGCCC
CCCGAAGGTTGTTTGCCAGGACGGGCTTTGGTCCGACACCGGTGGTGCAGGCGGCAGCAGCAGTCTCCAT
GCTTGTAGGTCTGCTGGTTTTTCCAGCCACTCTGGCTTCCCCATTTGCCAAAGAAATCTGTGAAGGCTCC
TCCATGTACCACAGCGGAGCATGCCGGCTGAGCTGGGGCTATGCCACTGCTATCCTCAACATGGTCCTGA
CCAGCCTGCTTGTCATCAGGTGGCAAGTGACCACAGTCCAGAGAGCAGCCGTCCCCTTCTCCAGTGAGAC
TCAGAGAGCCATCCTTGTGCCAGAATAA

Translation (195 aa):
MEVGVRAALGLSLTGMSGLSLISPAWFQSLSSSYGIFTYCSWPPGDCWNQSCVTFGSLKDMPSLAWKVSA
ATLLGGWLLLSISALLLSAWALAPRRLFARTGFGPTPVVQAAAAVSMLVGLLVFPATLASPFAKEICEGS
SMYHSGACRLSWGYATAILNMVLTSLLVIRWQVTTVQRAAVPFSSETQRAILVPE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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