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Report for CCDS23405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23405.1 Public Mus musculus 9 Plscr2 23 108 98 CCDS HistoryNCBI Gene:18828Re-query CCDS DB by CCDS ID:23405.1Re-query CCDS DB by GeneID:18828See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034932.13 ENSMUSP00000034932.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034932.13Link to Ensembl Protein Viewer:ENSMUSP00000034932.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000034932Re-query CCDS DB by Protein ID:ENSMUSP00000034932
Original member Current member EBI ENSMUST00000180154.7 ENSMUSP00000136481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000180154.7Link to Ensembl Protein Viewer:ENSMUSP00000136481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000180154Re-query CCDS DB by Protein ID:ENSMUSP00000136481
Original member Current member NCBI NM_001195084.1 NP_001182013.1 Accepted alive Link to Nucleotide Sequence:NM_001195084.1Link to Protein Sequence:NP_001182013.1Re-query CCDS DB by Nucleotide ID:NM_001195084Re-query CCDS DB by Protein ID:NP_001182013Link to BLAST:NP_001182013.1
Original member Current member NCBI NM_008880.3 NP_032906.2 Accepted alive Link to Nucleotide Sequence:NM_008880.3Link to Protein Sequence:NP_032906.2Re-query CCDS DB by Nucleotide ID:NM_008880Re-query CCDS DB by Protein ID:NP_032906Link to BLAST:NP_032906.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182013.1 307 Q9DCW2 307 100% 0 0
NP_032906.2 307 Q9DCW2 307 100% 0 0

Chromosomal Locations for CCDS 23405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92282120 92282192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92287572 92287804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92289663 92289705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92290639 92290859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92290977 92291138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92295515 92295676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92297172 92297201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGAGGCTCCTCGCTCAGGAACATACTTGCCAGCTGGGTATGCCCCTCAGTATCCTCCAGCAGCAGTCC
AAGGACCTCCAGAGCATACTGGACGCCCCACATTCCAGACTAACTACCAAGTTCCCCAGTCTGGTTATCC
AGGACCTCAGGCTAGCTACACAGTCTCAACATCTGGACATGAAGGTTATGCTGCTACACGGCTTCCTATT
CAAAATAATCAGACTATAGTCCTTGCAAACACTCAGTGGATGCCAGCACCACCACCTATTCTGAACTGCC
CACCTGGGCTAGAATACTTAAATCAGATAGATCAGCTTCTGATTCATCAGCAAGTTGAACTTCTAGAAGT
CTTAACAGGCTTTGAAACAAATAACAAATTTGAAATCAAGAACAGCCTCGGGCAGATGGTTTATGTTGCA
GTGGAAGATACTGACTGCTGTACTCGAAATTGCTGTGAAGCGTCTAGACCTTTCACTTTAAGAATCCTGG
ATCATCTGGGCCAAGAAGTCATGACTCTGGAGAGACCTCTGAAATGCAGTAGCTGCTGCTTCCCTTGCTG
CCTCCAGGAGATAGAAATCCAGGCTCCTCCAGGGGTGCCAATAGGTTATGTGACTCAGACCTGGCACCCA
TGTCTGCCAAAGCTCACTCTTCAGAACGACAAGAGGGAGAATGTTCTAAAAGTAGTTGGTCCATGTGTTG
CATGCACCTGCTGTTCAGATATTGACTTTGAGATCAAGTCTCTTGATGAAGTGACTAGAATTGGTAAGAT
CACCAAGCAGTGGTCTGGTTGTGTGAAAGAGGCCTTCACGGATTCGGATAACTTTGGGATCCAATTCCCG
CTAGACCTGGAGGTGAAGATGAAAGCTGTGACGCTTGGTGCTTGCTTCCTCATAGATTACATGTTTTTTG
AAGGCTGTGAGTAG

Translation (307 aa):
MEAPRSGTYLPAGYAPQYPPAAVQGPPEHTGRPTFQTNYQVPQSGYPGPQASYTVSTSGHEGYAATRLPI
QNNQTIVLANTQWMPAPPPILNCPPGLEYLNQIDQLLIHQQVELLEVLTGFETNNKFEIKNSLGQMVYVA
VEDTDCCTRNCCEASRPFTLRILDHLGQEVMTLERPLKCSSCCFPCCLQEIEIQAPPGVPIGYVTQTWHP
CLPKLTLQNDKRENVLKVVGPCVACTCCSDIDFEIKSLDEVTRIGKITKQWSGCVKEAFTDSDNFGIQFP
LDLEVKMKAVTLGACFLIDYMFFEGCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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