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Report for CCDS25647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25647.1 Public Mus musculus 11 Caskin2 23 108 98 CCDS HistoryNCBI Gene:140721Re-query CCDS DB by CCDS ID:25647.1Re-query CCDS DB by GeneID:140721See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041684.10 ENSMUSP00000041328.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041684.10Link to Ensembl Protein Viewer:ENSMUSP00000041328.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041684Re-query CCDS DB by Protein ID:ENSMUSP00000041328
Original member Current member NCBI NM_080643.2 NP_542374.2 Accepted alive Link to Nucleotide Sequence:NM_080643.2Link to Protein Sequence:NP_542374.2Re-query CCDS DB by Nucleotide ID:NM_080643Re-query CCDS DB by Protein ID:NP_542374Link to BLAST:NP_542374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542374.2 1201 Q8VHK1 1201 100% 0 0

Chromosomal Locations for CCDS 25647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115799987 115800077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115800360 115800582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115800666 115802141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115802281 115802419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115802548 115802649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115802729 115802839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115802999 115803087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115803212 115803272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115803358 115803479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115803582 115803843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115804476 115804570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115804699 115804807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115805081 115805189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115806304 115806434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115806534 115806629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115806719 115806864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115807264 115807361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115807839 115807890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115811887 115811980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3606 nt):
ATGGGTCGTGAACAGGACCTTATCCTTGCCGTCAAGAATGGAGACGTGACCTGCGTGCAGAAACTGGTGG
CTAAAGTGAAGGCTGCAAAAACAAAGCTCCTGGGCTCCACGAAGAGACTCAACATTAACTACCAGGATGC
TGATGGATTCTCTGCTCTCCACCACGCTGCCTTGGGGGGCAGCCTGGAACTCATAGCCTTGCTGCTGGAG
GCTCAAGCCACTGTGGACATCAAGGACAGCAATGGCATGCGCCCCCTACACTATGCAGCCTGGCAGGGCC
GCCTGGAGCCCGTGAGACTGCTGCTCCGGGCTTCCGCCGCTGTCAACGCTGCCTCGCTGGATGGGCAGAT
CCCCCTGCACCTGGCTGCGCAGTACGGGCATTATGAGGTGTCAGAAATGCTTCTCCAGCACCAGTCTAAC
CCATGCCTAGTCAACAAGTTGAAGAAGACACCCCTAGACCTAGCCTGTGAATTTGGGCGGCTCAAGGTGG
CCCAGCTGCTTTTGAACAGCCACTTATGCGTGGCACTGCTAGAGGGAGAGGCGAAGGACCCATGTGACCC
CAACTACACCACACCCCTGCACTTGGCTGCCAAGAATGGCCACAGAGAAGTCATCAGGCAGCTCTTGAAA
GCTGGTATTGAGATCAACCGCCAGACCAAGACAGGCACCGCACTCCACGAGGCTGCGCTGTATGGCAAGA
CTGAGGTGGTGCGGCTGCTCCTGGAGGGAGGTGTGGACGTGAATATCCGGAACACATATAACCAGACGGC
GCTGGACATAGTCAATCAGTTCACCACCTCCCAGGCCAGCCGGGAAATCAAGCAGCTACTTCGAGAGGCT
TCAGGGATCTTGAAGGTTCGAGCGCTTAAGGATTTCTGGAACCTTCATGACCCCACCGCTCTCAATGTCC
GAGCAGGAGATGTCATCACGGTGCTCGAACAGCACCCCGATGGCCGCTGGAAGGGCCACATCCATGAGAG
CCAAAGGGGCACAGACCGTGTTGGCTACTTCCCCCCGGGCATCGTCGAGGTGGTCAGCAAGCGGGTGGGC
ATCCCTGTGGCCCGCCTCCCCTCTGCCCCCACCCCTCTGCGACCAAGCTTCTCCCGGATATCACAACCTG
CGGCCGACGATCCCCTGCCATCTGTCCCCTACGGCCAGCTCCCTCGGGTGGGCCTCAGCCCAGACAGTCC
AGCAGGTGACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAG
AGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTCAGCCACTGCCCTCTGCCA
GTGAGGACCAGGGACTGCCAGGCCTGCATGCCCCGTCCCCAGCAGACAACCTGAGCCACCGCCCTCTGGC
CGGTTACCGCTCTGGAGAGATCTTCACCCAGGATGTGAGACCAGAGCAGCTACTGGAAGGGAAGGATGCA
CAGGCCATTCATAACTGGCTAAGTGAGTTCCAGCTAGAGGGCTACACTGCCCACTTCCTGCAGGCTGGCT
ACGATGTGCCGACCATCAGCCGGATGACACCTGAGGATTTGACGGCCATTGGGGTGACCAAGCCTGGACA
CAGGAAGAAGATCGCCTCGGAGATTGCCCAGCTTAGCATTGCTGAGTGGCTGCCCAATTATATCCCGGTG
GACTTGCTGGAGTGGCTGTGTGCACTGGGGCTGCCGCAGTACCACAAGCAGCTGGTGAGCAGCGGCTACG
ACTCTATGGGGCTGGTGGCCGACCTCACCTGGGAGGAGCTGCAGGAGATAGGCGTGAACAAGCTGGGGCA
CCAGAAGAAGCTAATGCTAGGTGTGAAACGGCTGGCAGAACTTCGGCGGGGCCTGCTGCATGGAGAAGCC
CTGGGTGAAGGCGGACGCCGGATGACCAGGGGTCCAGAGCTGATGGCCATCGAAGGCCTGGAGAATGGGG
AAGGCCCAACTACAGCTGGCCCTCGCCTCCTCACCTTTCAGGGCAGTGAGCTGAGCCCAGAGCTACAGGC
AGCCATGGCAGGGGGTGGCTCAGAACCACTACCCCTTCCTCCGGCCCGTTCTCCTAGCCAGGAGAGCATT
GGCGCCCGCTCACGGGGCTCTGGTCACTCACAGGAACAGCCTGTTCCCCAGCCCAGTGTTGGTGACCCCA
GCGCCCCACAGGAGAGGAACCTTCCGGAGGGTACAGAGCGCCCCTCTAAGCTTTGTTCTCCGCTCCCTGG
CCAAGGACCTGCCCCATATGTCTTTATGTGTCCACAGAACTTACCCTCTAGCCCAGCCCCAGGGCCACCT
CCTGGTGTTCCCCGGGCCTTCTCCTACTTGGCTGGCTCTCCGGCCGCTCCTCCAGACCCACCTCGGCCGA
AGCGCCGGTCTCACAGCTTGAGCCGCCCTGGCCCTGCTGAGGGGGAAGCTGAAGGGGAGGCTGAAGGGCC
AGTGGGCAGTGCCCTGGGCAGTTATGCCACGCTTACTCGGAGACCAGGACGCAGCACCCTTGCCCGGACT
AGTCCTAGCCTGACCCCAACTCGAGGGACCCCCCGAAGCCAGTCCTTTGCCCTCCGTGCCCGTCGTAAAG
GGCCCCCACCCCCACCCCCCAAGCGCCTCAGTTCTGTCTCTGGCTCCACCGAGCCACCTTCACTAGACGG
AACCTCGGGGCCCAAGGAAGGGGCCACAGGTCCCCGGAGGAGAACACTGAGTGAACCAACCGGCCCCTCG
GAGTCCCCTGGTCCTTCCGCACCAACTGGCCCTGTGTCGGACACAGAAGAGGAACCTGGCCCTGAGGGAA
CACCCCCATCTCGGGGCAGCTCAGGGGAAGGCCTGCCATTCGCAGAGGAGGGGAACCTGACTATCAAGCA
GCGGCCGAAGCCAGCCGGTCCCCCTCCCCGTGAGACACCTGTGCCCCCTGGCCTTGACTTCAACCTCACA
GAGTCAGATACTGTCAAACGCAGGCCCAAGTGCAAGGAGAGAGAGCCACTACAGACTGCACTGTTGGCCT
TTGGGGTAGTGGGCAGTGATACCCCGGGCCCCTCCAATCCCCTGTCCACCCAAGCCCCGTGTGACCCTCC
CTCAGCTTCCTCTAACCCTCCACAACGGTCTGAGCCCAGCGTCCTTCCATCGCAAGGAACTTCAGCCTCT
TCTCTCAGCTCTGTAACTCAGTCCCCTGGGCACCCAGGGCCCAGTGCTGGACCCGCTCTGGCAAACTCCA
CAGGCAGTAAGCCCAATGTGGAGACGGAGCCTCCGGCTCCCCCGGCCGCCCTCCTCAAAGTGCCTGGAGC
AGGAACAGCTCCCAAGCCTGTGTCTGTGGCCTGCACTCAGCTGGCATTTTCAGGCCCAAAGCTGGCCCCC
CGGCTCGGTCCCCGTCCAGTACCCCCTCCAAGGCCCGAGAATACCGGGCCTGTGTGTCCAGGTCGGGCCC
AACAGAGACTGGAACAGACCAGCTCATCCTTGGAAGCCGCACTGAGGGCAGCTGAGAAGAGCATTGGCAC
CGAGGAACGAGACGGCCCCACAGGGACGTCTACCAAGCACATTCTGGATGACATTAGCACTATGTTCGAT
GCCCTGGCGGACCAGCTGGATGCTATGCTGGACTGA

Translation (1201 aa):
MGREQDLILAVKNGDVTCVQKLVAKVKAAKTKLLGSTKRLNINYQDADGFSALHHAALGGSLELIALLLE
AQATVDIKDSNGMRPLHYAAWQGRLEPVRLLLRASAAVNAASLDGQIPLHLAAQYGHYEVSEMLLQHQSN
PCLVNKLKKTPLDLACEFGRLKVAQLLLNSHLCVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLK
AGIEINRQTKTGTALHEAALYGKTEVVRLLLEGGVDVNIRNTYNQTALDIVNQFTTSQASREIKQLLREA
SGILKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRVGYFPPGIVEVVSKRVG
IPVARLPSAPTPLRPSFSRISQPAADDPLPSVPYGQLPRVGLSPDSPAGDRNSVGSEGSVGSIRSAGSGQ
SSEGTNGHGTGLLIENAQPLPSASEDQGLPGLHAPSPADNLSHRPLAGYRSGEIFTQDVRPEQLLEGKDA
QAIHNWLSEFQLEGYTAHFLQAGYDVPTISRMTPEDLTAIGVTKPGHRKKIASEIAQLSIAEWLPNYIPV
DLLEWLCALGLPQYHKQLVSSGYDSMGLVADLTWEELQEIGVNKLGHQKKLMLGVKRLAELRRGLLHGEA
LGEGGRRMTRGPELMAIEGLENGEGPTTAGPRLLTFQGSELSPELQAAMAGGGSEPLPLPPARSPSQESI
GARSRGSGHSQEQPVPQPSVGDPSAPQERNLPEGTERPSKLCSPLPGQGPAPYVFMCPQNLPSSPAPGPP
PGVPRAFSYLAGSPAAPPDPPRPKRRSHSLSRPGPAEGEAEGEAEGPVGSALGSYATLTRRPGRSTLART
SPSLTPTRGTPRSQSFALRARRKGPPPPPPKRLSSVSGSTEPPSLDGTSGPKEGATGPRRRTLSEPTGPS
ESPGPSAPTGPVSDTEEEPGPEGTPPSRGSSGEGLPFAEEGNLTIKQRPKPAGPPPRETPVPPGLDFNLT
ESDTVKRRPKCKEREPLQTALLAFGVVGSDTPGPSNPLSTQAPCDPPSASSNPPQRSEPSVLPSQGTSAS
SLSSVTQSPGHPGPSAGPALANSTGSKPNVETEPPAPPAALLKVPGAGTAPKPVSVACTQLAFSGPKLAP
RLGPRPVPPPRPENTGPVCPGRAQQRLEQTSSSLEAALRAAEKSIGTEERDGPTGTSTKHILDDISTMFD
ALADQLDAMLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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