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Report for CCDS15705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15705.1 Public Mus musculus 2 Plxdc2 23 108 98 CCDS HistoryNCBI Gene:67448Re-query CCDS DB by CCDS ID:15705.1Re-query CCDS DB by GeneID:67448See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028081.12 ENSMUSP00000028081.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028081.12Link to Ensembl Protein Viewer:ENSMUSP00000028081.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028081Re-query CCDS DB by Protein ID:ENSMUSP00000028081
Original member Current member NCBI NM_026162.6 NP_080438.2 Accepted alive Link to Nucleotide Sequence:NM_026162.6Link to Protein Sequence:NP_080438.2Re-query CCDS DB by Nucleotide ID:NM_026162Re-query CCDS DB by Protein ID:NP_080438Link to BLAST:NP_080438.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080438.2 530 Q9DC11 530 100% 0 0

Chromosomal Locations for CCDS 15705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 16357126 16357237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16512022 16512233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16548117 16548263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16565336 16565405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16638587 16638709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16650109 16650227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16660774 16660873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16669494 16669589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16669823 16669904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16703317 16703383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16712082 16712229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16713670 16713708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16729253 16729413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 16751191 16751307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGCAAGGTTCCGGAGGGCCGACCTGGCCGCAGCAGGAGTTATGTTACTTTGTCACTTTTTAACAGACC
GGTTCCAGTTCGCCCACGGGGAGCCTGGACACCATACCAATGATTGGATTTATGAAGTTACAAACGCTTT
TCCTTGGAATGAAGAGGGGGTAGAAGTGGACTCTCAAGCATACAACCACAGGTGGAAAAGAAATGTGGAC
CCTTTTAAGGCAGTAGACACAAACAGAGCCAGCATGGGCCAAGCCTCTCCAGAGTCCAAAGGGTTCACTG
ACCTGCTACTGGATGACGGACAGGACAATAACACCCAGATAGAGGAGGACACGGATCACAATTACTACAT
TTCTCGGATATATGGTCCAGCGGATTCTGCCAGCCGGGATCTGTGGGTTAACATAGACCAAATGGAAAAA
GACAAAGTGAAGATTCACGGGATACTTTCCAACACTCATCGGCAAGCTGCAAGAGTGAATCTGTCCTTCG
ATTTTCCATTTTATGGTCATTTTCTAAATGAAGTCACTGTGGCAACTGGGGGTTTCATATATACTGGAGA
AGTTGTACATCGAATGCTCACAGCTACACAGTATATAGCTCCTTTAATGGCAAATTTTGATCCCAGTGTA
TCCAGAAATTCAACTGTCAGATATTTTGATAATGGCACAGCTCTTGTTGTCCAGTGGGACCATGTCCACC
TGCAGGATAATTACAACCTGGGAAGCTTCACATTCCAGGCCACACTCCTCATGGACGGGCGCATCATCTT
TGGATACAAAGAAATCCCTGTCTTGGTCACACAGATAAGTTCTACCAACCATCCAGTGAAAGTCGGGTTG
TCTGATGCATTTGTCGTGGTCCACAGGATCCAGCAAATACCCAATGTTCGAAGAAGAACAATTTATGAAT
ATCACCGAGTAGAACTACAAATGTCCAAAATTACCAACATCTCAGCTGTGGAGATGACTCCACTTCCCAC
ATGTCTCCAGTTCAATGGTTGTGGCCCTTGTGTGTCCTCGCAGATTGGTTTCAACTGCAGTTGGTGCAGC
AAACTTCAAAGATGCTCCAGTGGATTTGATCGCCATCGGCAGGACTGGGTGGACAGTGGATGCCCGGAAG
AGGTACAGTCAAAAGAGAAGATGTGTGAGAAGACAGAGCCAGGAGAGACATCTCAAACTACCACGACCTC
CCACACGACCACCATGCAATTCAGGGTCCTGACCACCACCAGGAGAGCTGTGACATCTCAGATGCCTACC
AGCCTGCCTACAGAAGATGACACGAAGATAGCCCTACATCTCAAAGACAGTGGAGCCTCCACAGATGACA
GTGCAGCTGAGAAGAAAGGAGGAACCCTCCATGCAGGCCTCATTGTTGGAATTCTCATCTTGGTCCTCAT
TATAGCAGCGGCCATTCTGGTGACAGTGTATATGTATCACCATCCAACATCAGCAGCCAGCATCTTCTTC
ATTGAGAGACGCCCAAGCAGATGGCCAGCAATGAAGTTTCGAAGAGGCTCAGGACACCCTGCCTATGCAG
AAGTTGAACCAGTTGGAGAGAAAGAAGGTTTTATTGTATCAGAGCAGTGCTAA

Translation (530 aa):
MARFRRADLAAAGVMLLCHFLTDRFQFAHGEPGHHTNDWIYEVTNAFPWNEEGVEVDSQAYNHRWKRNVD
PFKAVDTNRASMGQASPESKGFTDLLLDDGQDNNTQIEEDTDHNYYISRIYGPADSASRDLWVNIDQMEK
DKVKIHGILSNTHRQAARVNLSFDFPFYGHFLNEVTVATGGFIYTGEVVHRMLTATQYIAPLMANFDPSV
SRNSTVRYFDNGTALVVQWDHVHLQDNYNLGSFTFQATLLMDGRIIFGYKEIPVLVTQISSTNHPVKVGL
SDAFVVVHRIQQIPNVRRRTIYEYHRVELQMSKITNISAVEMTPLPTCLQFNGCGPCVSSQIGFNCSWCS
KLQRCSSGFDRHRQDWVDSGCPEEVQSKEKMCEKTEPGETSQTTTTSHTTTMQFRVLTTTRRAVTSQMPT
SLPTEDDTKIALHLKDSGASTDDSAAEKKGGTLHAGLIVGILILVLIIAAAILVTVYMYHHPTSAASIFF
IERRPSRWPAMKFRRGSGHPAYAEVEPVGEKEGFIVSEQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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