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Report for CCDS23686.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23686.1 Public Mus musculus 10 Lrp11 23 108 98 CCDS HistoryNCBI Gene:237253Re-query CCDS DB by CCDS ID:23686.1Re-query CCDS DB by GeneID:237253See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23686.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019931.11 ENSMUSP00000019931.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019931.11Link to Ensembl Protein Viewer:ENSMUSP00000019931.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019931Re-query CCDS DB by Protein ID:ENSMUSP00000019931
Original member NCBI NM_172784.3 NP_766372.1 Updated not alive Link to Nucleotide Sequence:NM_172784.3Link to Protein Sequence:NP_766372.1Re-query CCDS DB by Nucleotide ID:NM_172784Re-query CCDS DB by Protein ID:NP_766372
Current member NCBI NM_172784.4 NP_766372.1 Accepted alive Link to Nucleotide Sequence:NM_172784.4Link to Protein Sequence:NP_766372.1Re-query CCDS DB by Nucleotide ID:NM_172784Re-query CCDS DB by Protein ID:NP_766372Link to BLAST:NP_766372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766372.1 483 Q8CB67 483 100% 0 0

Chromosomal Locations for CCDS 23686.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7590052 7590613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7596104 7596264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7598707 7598848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7602829 7602954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7604174 7604383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7608544 7608639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7623630 7623784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCCACAAGGGGAGGAGGACCGGGCCCCGGCTTCCGGCACCGCGCGCTCCGCGGGCTGCTGCTGCTCT
GC
CTCTGGCTGCCCGGCAGCCGGCCCGGGGAGCCCGCCGCTCCGTCGTCCGGAGTGGATAGGCTGCTTCA
G
GACTTTCGCCGGCAGCTACAGCGGGCACGGCCTCGCGAGGAGCTAGAGCCGGAGCTACTGGGCGGCCCG
CGG
GAGGATTGCCCGGGTGCGGGCGGTACGGCGGTCTACCGGGCGGTGCCCGATACCATCATCCGCACCC
AG
GATTCCATCGCGGCGGGAGCCAGCTTCCTGCGCGCACCCGGGAGCGTGCGGGGTTGGCGGCAGTGCGT
G
ACGGCCTGCTGCTCCGAGCCGAGCTGCTCGGTGGCAGTGGTGCAGCTGCCCCGGGGGCCCAGCGTGCCC
GCA
CCTATGCCCGCACCCCGCTGCTACCTGTTCAACTGCACGGCGCGCGGCCGCAGCGTCTGCAAGTTCG
CG
CCACTCCGCGGGTACCGCACTTACACCCTCAGTCGCGCCGAGGACGCCGCTGGGATCCCTCCCCGGCC
A
GATGAGGACAAGCCTCCCGTTAGCAAGGCTGGGAAGGATGTGGTTTTACATCTGCCCACAGACGGGGTA
GTT
CTAGATGGTCGAGAAAGCTCGGACGACCACGCCATTGTCCTTTATGAGTGGACGCTGCAGCAGGGTG
AC
CCATCGTCAGTGGACATGAAGGTGCCTCAGCCAGGAACCCTGAGGCTGTCCCGCCTGAAGGAAGGAGC
T
TACATCTTCCAGCTGACTGTGACTGACTCCGTGGGTCAGAGAAGCTCCGATAACGTCTCTGTCACTGTG
CTT
CCCAGGCCCTACTCCACGGGAGGATGCTCCAGTGCTTGCTCGCGCTACCATTTCTTCTGTGACAGTG
GC
TGCTGTATTGACATAGCGTTGGCTTGTGATGGCGTGAGGCAGTGTCCCGACGGGTCTGATGAAGACTT
C
TGTCAAAACTTGGCTCTTGACCGCAAGTTGGTGACACACACAGTGGCTACTTCTGCCCAGCCAGGAGCC
ATG
GGATTAAATGAAGGTGAAGGAGACCCCAAGTTGGAAAAATCCCAGAGAGCCACTACCCACAACCAAC
CC
GCTACTGTATCCCACCCAGAGACGAGGATCCACTCCACCCAGAAGGCGCCAGAGAGTCAGATCAATCC
T
GTCCAGCCAGACAGCAATTCCTCAGGAAAGAACCAAGAAGAAGGAAATTATGATCTCAAGTCCAAGAGT
GGC
CAAGCAGGAGGGGAGCACCCGGCCCCGGAAGCAGGTGCGGTGCTACCTCTGGCATTAGGTCTGGCCA
TC
ACTGTTTTGTTGCTTCTCATGGTGACATGCCGACTCCGACTGGTGAAGCAGAAACTCAAGAAAGCCCG
G
CCCATTACATCTGAGGAATCGGACTACCTCATCAATGGGATGTATCTGTAA


Translation (483 aa):
MATRGGGPGPGFRHRALRGLLLLCLWLPGSRPGEPAAPSSGVDRLLQDFRRQLQRARPREELEPELLGGP
R
EDCPGAGGTAVYRAVPDTIIRTQDSIAAGASFLRAPGSVRGWRQCVTACCSEPSCSVAVVQLPRGPSVP
A
PMPAPRCYLFNCTARGRSVCKFAPLRGYRTYTLSRAEDAAGIPPRP
DEDKPPVSKAGKDVVLHLPTDGV
V
LDGRESSDDHAIVLYEWTLQQGDPSSVDMK
VPQPGTLRLSRLKEGAYIFQLTVTDSVGQRSSDNVSVTV
L
PRPYSTG
GCSSACSRYHFFCDSGCCIDIALACDGVRQCPDGSDEDFCQNLALDRKLVTHTVATSAQPGA
M
GLNEGEGDPKLEKSQRATTHNQPATVSHPETRIHSTQKAPESQINPVQP
DSNSSGKNQEEGNYDLKSKS
G
QAGGEHPAPEA
GAVLPLALGLAITVLLLLMVTCRLRLVKQKLKKARPITSEESDYLINGMYL



Links Key
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 Genome Browser Links:   Ensembl Genome Browser
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