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Report for CCDS51468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51468.1 Public Mus musculus 5 Nsd2 23 108 98 CCDS HistoryNCBI Gene:107823Re-query CCDS DB by CCDS ID:51468.1Re-query CCDS DB by GeneID:107823See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058096.13 ENSMUSP00000058940.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058096.13Link to Ensembl Protein Viewer:ENSMUSP00000058940.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058096Re-query CCDS DB by Protein ID:ENSMUSP00000058940
Original member Current member NCBI NM_175231.2 NP_780440.2 Accepted alive Link to Nucleotide Sequence:NM_175231.2Link to Protein Sequence:NP_780440.2Re-query CCDS DB by Nucleotide ID:NM_175231Re-query CCDS DB by Protein ID:NP_780440Link to BLAST:NP_780440.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780440.2 1365 Q8BVE8-1 1365 100% 0 0

Chromosomal Locations for CCDS 51468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33843141 33843737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33846105 33846267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33854610 33854776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33855254 33855736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33861034 33861178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33864660 33864778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33867577 33867658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33868754 33868878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33879058 33879189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33880052 33880175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33880987 33881187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33881988 33882167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33882527 33882683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33882799 33883004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33884987 33885090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33885382 33885651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33887252 33887368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33891506 33891647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33891940 33892046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33893405 33893609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33894906 33895177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4098 nt):
ATGGAATTTAGCATCAGAAAAAGTCCTCTTTCTGTTCAGAAAGTTGTAAAGTGCATGAAGATGAAGCAGA
CACCAGAAATCCTTGGCAGTGCAAATGGAAAGACTCAGAACTGTGAAGTGAATCATGAATGTTCTGTATT
CCTCAGCAAAGCTCAACTTTCTAACAGCCTACAGGAGGGGGTCATGCAGAAATTTAATGGCCATGATGCG
CTCCCCTTTCTTCCAGCAGAGAAGTTGAAAGATCTTACTTCTTGTGTTTTTAATGGAGAACCTGGTGCTC
ATGATACTAAATTGTGTTTTGAGGCCCAGGAAGTAAAAGGAATTGGGACACCACCCAATACTACACCTAT
CAAAAATGGCTCTCCAGAAATTAAACTGAAAATCACCAAAACATACATGAATGGGAAACCTCTCTTTGAA
TCTTCAATTTGTGGTGACGGTGCTGCTGATGTGTCTCAGTCAGAAGAAAACGAACAAAAATCTGATAATA
AGACTAGGAGGAACAGGAAGAGGAGCATAAAATATGACTCTTTACTGGAGCAGGGCCTTGTGGAAGCAGC
TTTAGTGTCCAAGATCTCAAGTCCTGCAGATAAAAAGATTCCAGTTAAGAAGGAGTCCTGTCCAAATACT
GGCAGAGACAGAGACCTCTTGTTAAAATACAACGTTGGTGATTTGGTGTGGTCCAAAGTGTCAGGTTACC
CTTGGTGGCCTTGCATGGTTTCTGCTGACCCACTCCTTCACAATCATACCAAACTTAAAGGTCAGAAAAA
AAGTGCACGCCAGTATCATGTACAGTTCTTTGGTGATGCCCCAGAAAGAGCTTGGATATTTGAGAAGAGC
CTTGTTGCTTTTGAAGGAGAAGAACAATTTGAAAAATTATGCCAAGAAAGTGCCAAGCAGGCACCCACGA
AAGCTGAGAAAATCAAGTTGTTGAAACCTATTTCGGGGAGATTGAGAGCCCAGTGGGAAATGGGCATTGT
CCAAGCTGAGGAAGCTGCCAGCATGTCAATAGAGGAGCGGAAAGCCAAATTTACCTTCCTTTATGTGGGG
GACCAATTGCACCTCAACCCTCAAGTAGCTAAGGAGGCTGGCATTGTTACAGAACCTTTGGGAGAAATGG
TGGACTCTTCAGGGGCCAGTGAAGAGGCTGCTGTAGACCCTGGGTCTGTGAGAGAAGAGGATATTCCCAC
GAAGAGAAGGCGAAGAACCAAAAGGTCTAGTTCTGCTGAGAACCAAGAAGGTGATCCTGGCACAGACAAG
AGTACACCTCCAAAGATGGCAGAGGCTGAACCTAAGCGAGGAGTAGGCTCTCCTGCTGGGAGGAAAAAGT
CCACAGGCTCTGCTCCTCGGAGCAGGAAGGGAGACTCAGCAGCCCAGTTTTTAGTCTTTTGTCAAAAACA
CAGAGATGAGGTTGTAGCTGAACATCCAGATGCCTCAGGGGAAGAGATTGAAGAATTGCTTGGGTCCCAG
TGGAGCATGCTCAATGAAAAGCAGAAAGCACGATATAATACAAAGTTTTCCCTAATGATCTCTGCCCAGT
CTGAAGAAGACTCTGGAAATGGGAATGGGAAAAAAAGAAGCCACACAAAGAGAGCAGATGACCCTGCAGA
GGATGTGGATGTTGAAGACGCGCCCAGGAAAAGACTTAGAGCAGATAAGCACAGTCTTCGGAAGAGAGAG
ACAATCACCGACAAAACGGCCAGAACAAGCTCTTACAAGGCTATAGAGGCAGCCTCCTCACTCAAGAGCC
AGGCAGCAACGAAAAATTTGTCTGATGCTTGCAAACCACTGAAGAAGCGAAATCGGGCTTCTGCAACAGC
GTCTTCAGCACTTGGGTTTAACAAAAGTTCATCTCCTTCTGCATCCTTAACTGAGCATGAGGTCTCAGAC
AGCCCAGGAGATGAACCATCAGAGTCTCCATATGAAAGTGCAGATGAAACACAGACTGAAGCATCCGTCT
CATCTAAAAAATCTGAAAGAGGAATGGCTGCCAAAAAGGAGTACGTGTGTCAGCTGTGTGAGAAGACAGG
CAGTCTCTTACTGTGTGAGGGCCCCTGTTGTGGAGCATTCCACCTAGCCTGCCTTGGACTTTCCCGAAGA
CCGGAAGGAAGATTCACCTGCACCGAATGTGCCTCAGGGATTCACTCATGCTTCGTATGTAAAGAAAGCA
AGATGGAGGTGAAACGTTGTGTGGTAAATCAGTGTGGAAAGTTTTACCATGAAGCCTGTGTAAAAAAATA
CCCTCTCACTGTGTTTGAGAGCCGAGGCTTCCGCTGTCCTCTCCATAGCTGTATGAGCTGCCATGCCTCC
AACCCTTCAAATCCACGGCCATCAAAAGGTAAAATGATGCGATGTGTCCGATGCCCCGTTGCCTATCATG
GAGGGGATGCCTGTCTGGCAGCAGGATGTTCGGTGATTGCTTCTAACAGCATAATCTGCACAGGCCACTT
CACTGCCCGGAAGGGGAAGCGGCACCATACCCATGTCAATGTGAGCTGGTGCTTTGTGTGCTCCAAAGGG
GGAAGCCTTCTGTGCTGTGAGGCCTGCCCAGCAGCCTTTCACCCCGATTGTCTAAACATCGAGATGCCCG
ATGGTAGCTGGTTCTGCAACGATTGCCGGGCTGGAAAGAAGCTCCACTTTCAAGACATCATCTGGGTCAA
ACTTGGTAACTACAGATGGTGGCCGGCAGAAGTTTGCCATCCCAAAAATGTTCCCCCAAATATTCAGAAA
ATGAAGCACGAGATTGGAGAATTCCCTGTATTTTTCTTTGGGTCTAAAGATTATTACTGGACGCATCAGG
CACGAGTGTTCCCATACATGGAGGGGGACCGGGGCAGCCGCTACCAGGGGGTCAGAGGGATCGGAAGAGT
CTTCAAGAACGCATTGCAAGAAGCTGAAGCTCGTTTTAATGAAGTCAAACTTCAGCGGGAAGCCCGAGAA
ACACAGGAGAGTGAGAGAAAGCCTCCACCATACAAGCATATCAAGGTGAATAAACCTTATGGTAAAGTCC
AGATCTACACAGCTGACATTTCTGAAATCCCGAAGTGCAACTGTAAGCCCACAGATGAGAACCCCTGTGG
CTCTGATTCAGAGTGTCTGAACAGGATGCTAATGTTTGAGTGCCACCCGCAGGTGTGTCCTGCAGGGGAA
TACTGCCAGAACCAGTGTTTCACTAAGCGCCAGTACCCTGAGACCAAGATCATCAAGACAGATGGCAAAG
GGTGGGGCCTGGTTGCCAAAAGGGACATCAGAAAAGGAGAATTTGTTAATGAGTATGTTGGTGAGCTGAT
TGATGAAGAGGAGTGTATGGCAAGAATCAAATATGCACATGAGAATGACATCACTCACTTCTACATGCTC
ACCATAGACAAGGACCGCATAATTGATGCTGGCCCCAAAGGGAATTATTCACGATTCATGAACCATAGCT
GCCAGCCCAATTGTGAGACCCTGAAGTGGACAGTGAATGGGGACACACGGGTTGGCCTGTTTGCTGTGTG
TGACATTCCTGCAGGTACAGAGCTGACTTTCAACTATAACCTTGATTGTTTGGGCAATGAAAAGACAGTC
TGTCGGTGTGGAGCCTCCAACTGTAGTGGGTTCCTTGGAGACAGACCAAAGACATCAGCATCCCTTTCAT
CAGAGGAAAAGGGTAAAAAGGCCAAGAAGAAAACCAGAAGGCGCAGAGCCAAGGGTGAAGGAAAACGGCA
GTCAGAGGATGAGTGCTTCCGCTGTGGTGATGGTGGGCAGCTGGTGCTGTGTGACCGCAAGTTCTGTACC
AAGGCCTACCACCTATCCTGCCTCGGTTTGGGCAAGCGGCCCTTTGGGAAGTGGGAATGTCCTTGGCATC
ACTGTGATGTATGTGGCAAACCTTCTACCTCATTTTGCCACCTCTGCCCCAACTCATTCTGTAAGGAACA
CCAAGATGGGACTGCTTTCCGTTCCACCCAGGATGGGCAGTCCTACTGCTGTGAGCATGACTTGAGGGCA
GACTCTTCAAGTAGCACCAAGACTGAGAAACCCTTTCCAGAATCACTGAAGTCAAAAGGAAAGAGGAAGA
AAAGGCGGTGCTGGCGAAGGGTCACAGATGGCAAATAG

Translation (1365 aa):
MEFSIRKSPLSVQKVVKCMKMKQTPEILGSANGKTQNCEVNHECSVFLSKAQLSNSLQEGVMQKFNGHDA
LPFLPAEKLKDLTSCVFNGEPGAHDTKLCFEAQEVKGIGTPPNTTPIKNGSPEIKLKITKTYMNGKPLFE
SSICGDGAADVSQSEENEQKSDNKTRRNRKRSIKYDSLLEQGLVEAALVSKISSPADKKIPVKKESCPNT
GRDRDLLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHNHTKLKGQKKSARQYHVQFFGDAPERAWIFEKS
LVAFEGEEQFEKLCQESAKQAPTKAEKIKLLKPISGRLRAQWEMGIVQAEEAASMSIEERKAKFTFLYVG
DQLHLNPQVAKEAGIVTEPLGEMVDSSGASEEAAVDPGSVREEDIPTKRRRRTKRSSSAENQEGDPGTDK
STPPKMAEAEPKRGVGSPAGRKKSTGSAPRSRKGDSAAQFLVFCQKHRDEVVAEHPDASGEEIEELLGSQ
WSMLNEKQKARYNTKFSLMISAQSEEDSGNGNGKKRSHTKRADDPAEDVDVEDAPRKRLRADKHSLRKRE
TITDKTARTSSYKAIEAASSLKSQAATKNLSDACKPLKKRNRASATASSALGFNKSSSPSASLTEHEVSD
SPGDEPSESPYESADETQTEASVSSKKSERGMAAKKEYVCQLCEKTGSLLLCEGPCCGAFHLACLGLSRR
PEGRFTCTECASGIHSCFVCKESKMEVKRCVVNQCGKFYHEACVKKYPLTVFESRGFRCPLHSCMSCHAS
NPSNPRPSKGKMMRCVRCPVAYHGGDACLAAGCSVIASNSIICTGHFTARKGKRHHTHVNVSWCFVCSKG
GSLLCCEACPAAFHPDCLNIEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQK
MKHEIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSRYQGVRGIGRVFKNALQEAEARFNEVKLQREARE
TQESERKPPPYKHIKVNKPYGKVQIYTADISEIPKCNCKPTDENPCGSDSECLNRMLMFECHPQVCPAGE
YCQNQCFTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECMARIKYAHENDITHFYML
TIDKDRIIDAGPKGNYSRFMNHSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKTV
CRCGASNCSGFLGDRPKTSASLSSEEKGKKAKKKTRRRRAKGEGKRQSEDECFRCGDGGQLVLCDRKFCT
KAYHLSCLGLGKRPFGKWECPWHHCDVCGKPSTSFCHLCPNSFCKEHQDGTAFRSTQDGQSYCCEHDLRA
DSSSSTKTEKPFPESLKSKGKRKKRRCWRRVTDGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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