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Report for CCDS51467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51467.1 Public Mus musculus 5 Nsd2 23 108 98 CCDS HistoryNCBI Gene:107823Re-query CCDS DB by CCDS ID:51467.1Re-query CCDS DB by GeneID:107823See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066854.13 ENSMUSP00000067205.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066854.13Link to Ensembl Protein Viewer:ENSMUSP00000067205.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066854Re-query CCDS DB by Protein ID:ENSMUSP00000067205
Original member Current member EBI ENSMUST00000075812.10 ENSMUSP00000075210.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075812.10Link to Ensembl Protein Viewer:ENSMUSP00000075210.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075812Re-query CCDS DB by Protein ID:ENSMUSP00000075210
Original member Current member NCBI NM_001081102.2 NP_001074571.2 Accepted alive Link to Nucleotide Sequence:NM_001081102.2Link to Protein Sequence:NP_001074571.2Re-query CCDS DB by Nucleotide ID:NM_001081102Re-query CCDS DB by Protein ID:NP_001074571Link to BLAST:NP_001074571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074571.2 1366 Q8BVE8-2 1366 100% 0 0

Chromosomal Locations for CCDS 51467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33843141 33843737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33846105 33846267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33854610 33854776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33855254 33855736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33861034 33861178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33864660 33864778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33867574 33867658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33868754 33868878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33879058 33879189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33880052 33880175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33880987 33881187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33881988 33882167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33882527 33882683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33882799 33883004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33884987 33885090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33885382 33885651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33887252 33887368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33891506 33891647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33891940 33892046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33893405 33893609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33894906 33895177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4101 nt):
ATGGAATTTAGCATCAGAAAAAGTCCTCTTTCTGTTCAGAAAGTTGTAAAGTGCATGAAGATGAAGCAGA
CACCAGAAATCCTTGGCAGTGCAAATGGAAAGACTCAGAACTGTGAAGTGAATCATGAATGTTCTGTATT
CCTCAGCAAAGCTCAACTTTCTAACAGCCTACAGGAGGGGGTCATGCAGAAATTTAATGGCCATGATGCG
CTCCCCTTTCTTCCAGCAGAGAAGTTGAAAGATCTTACTTCTTGTGTTTTTAATGGAGAACCTGGTGCTC
ATGATACTAAATTGTGTTTTGAGGCCCAGGAAGTAAAAGGAATTGGGACACCACCCAATACTACACCTAT
CAAAAATGGCTCTCCAGAAATTAAACTGAAAATCACCAAAACATACATGAATGGGAAACCTCTCTTTGAA
TCTTCAATTTGTGGTGACGGTGCTGCTGATGTGTCTCAGTCAGAAGAAAACGAACAAAAATCTGATAATA
AGACTAGGAGGAACAGGAAGAGGAGCATAAAATATGACTCTTTACTGGAGCAGGGCCTTGTGGAAGCAGC
TTTAGTGTCCAAGATCTCAAGTCCTGCAGATAAAAAGATTCCAGTTAAGAAGGAGTCCTGTCCAAATACT
GGCAGAGACAGAGACCTCTTGTTAAAATACAACGTTGGTGATTTGGTGTGGTCCAAAGTGTCAGGTTACC
CTTGGTGGCCTTGCATGGTTTCTGCTGACCCACTCCTTCACAATCATACCAAACTTAAAGGTCAGAAAAA
AAGTGCACGCCAGTATCATGTACAGTTCTTTGGTGATGCCCCAGAAAGAGCTTGGATATTTGAGAAGAGC
CTTGTTGCTTTTGAAGGAGAAGAACAATTTGAAAAATTATGCCAAGAAAGTGCCAAGCAGGCACCCACGA
AAGCTGAGAAAATCAAGTTGTTGAAACCTATTTCGGGGAGATTGAGAGCCCAGTGGGAAATGGGCATTGT
CCAAGCTGAGGAAGCTGCCAGCATGTCAATAGAGGAGCGGAAAGCCAAATTTACCTTCCTTTATGTGGGG
GACCAATTGCACCTCAACCCTCAAGTAGCTAAGGAGGCTGGCATTGTTACAGAACCTTTGGGAGAAATGG
TGGACTCTTCAGGGGCCAGTGAAGAGGCTGCTGTAGACCCTGGGTCTGTGAGAGAAGAGGATATTCCCAC
GAAGAGAAGGCGAAGAACCAAAAGGTCTAGTTCTGCTGAGAACCAAGAAGGTGATCCTGGCACAGACAAG
AGTACACCTCCAAAGATGGCAGAGGCTGAACCTAAGCGAGGAGTAGGCTCTCCTGCTGGGAGGAAAAAGT
CCACAGGCTCTGCTCCTCGGAGCAGGAAGGGAGACTCAGCAGCCCAGTTTTTAGTCTTTTGTCAAAAACA
CAGAGATGAGGTTGTAGCTGAACATCCAGATGCCTCAGGGGAAGAGATTGAAGAATTGCTTGGGTCCCAG
TGGAGCATGCTCAATGAAAAGCAGAAAGCACGATATAATACAAAGTTTTCCCTAATGATCTCTGCCCAGT
CTGAAGAAGACTCTGGAAATGGGAATGGGAAAAAAAGAAGCCACACAAAGAGAGCAGATGACCCTGCAGA
GGATGTGGATGTTGAAGACGCGCCCAGGAAAAGACTTAGAGCAGATAAGCACAGTCTTCGGAAGCAGAGA
GAGACAATCACCGACAAAACGGCCAGAACAAGCTCTTACAAGGCTATAGAGGCAGCCTCCTCACTCAAGA
GCCAGGCAGCAACGAAAAATTTGTCTGATGCTTGCAAACCACTGAAGAAGCGAAATCGGGCTTCTGCAAC
AGCGTCTTCAGCACTTGGGTTTAACAAAAGTTCATCTCCTTCTGCATCCTTAACTGAGCATGAGGTCTCA
GACAGCCCAGGAGATGAACCATCAGAGTCTCCATATGAAAGTGCAGATGAAACACAGACTGAAGCATCCG
TCTCATCTAAAAAATCTGAAAGAGGAATGGCTGCCAAAAAGGAGTACGTGTGTCAGCTGTGTGAGAAGAC
AGGCAGTCTCTTACTGTGTGAGGGCCCCTGTTGTGGAGCATTCCACCTAGCCTGCCTTGGACTTTCCCGA
AGACCGGAAGGAAGATTCACCTGCACCGAATGTGCCTCAGGGATTCACTCATGCTTCGTATGTAAAGAAA
GCAAGATGGAGGTGAAACGTTGTGTGGTAAATCAGTGTGGAAAGTTTTACCATGAAGCCTGTGTAAAAAA
ATACCCTCTCACTGTGTTTGAGAGCCGAGGCTTCCGCTGTCCTCTCCATAGCTGTATGAGCTGCCATGCC
TCCAACCCTTCAAATCCACGGCCATCAAAAGGTAAAATGATGCGATGTGTCCGATGCCCCGTTGCCTATC
ATGGAGGGGATGCCTGTCTGGCAGCAGGATGTTCGGTGATTGCTTCTAACAGCATAATCTGCACAGGCCA
CTTCACTGCCCGGAAGGGGAAGCGGCACCATACCCATGTCAATGTGAGCTGGTGCTTTGTGTGCTCCAAA
GGGGGAAGCCTTCTGTGCTGTGAGGCCTGCCCAGCAGCCTTTCACCCCGATTGTCTAAACATCGAGATGC
CCGATGGTAGCTGGTTCTGCAACGATTGCCGGGCTGGAAAGAAGCTCCACTTTCAAGACATCATCTGGGT
CAAACTTGGTAACTACAGATGGTGGCCGGCAGAAGTTTGCCATCCCAAAAATGTTCCCCCAAATATTCAG
AAAATGAAGCACGAGATTGGAGAATTCCCTGTATTTTTCTTTGGGTCTAAAGATTATTACTGGACGCATC
AGGCACGAGTGTTCCCATACATGGAGGGGGACCGGGGCAGCCGCTACCAGGGGGTCAGAGGGATCGGAAG
AGTCTTCAAGAACGCATTGCAAGAAGCTGAAGCTCGTTTTAATGAAGTCAAACTTCAGCGGGAAGCCCGA
GAAACACAGGAGAGTGAGAGAAAGCCTCCACCATACAAGCATATCAAGGTGAATAAACCTTATGGTAAAG
TCCAGATCTACACAGCTGACATTTCTGAAATCCCGAAGTGCAACTGTAAGCCCACAGATGAGAACCCCTG
TGGCTCTGATTCAGAGTGTCTGAACAGGATGCTAATGTTTGAGTGCCACCCGCAGGTGTGTCCTGCAGGG
GAATACTGCCAGAACCAGTGTTTCACTAAGCGCCAGTACCCTGAGACCAAGATCATCAAGACAGATGGCA
AAGGGTGGGGCCTGGTTGCCAAAAGGGACATCAGAAAAGGAGAATTTGTTAATGAGTATGTTGGTGAGCT
GATTGATGAAGAGGAGTGTATGGCAAGAATCAAATATGCACATGAGAATGACATCACTCACTTCTACATG
CTCACCATAGACAAGGACCGCATAATTGATGCTGGCCCCAAAGGGAATTATTCACGATTCATGAACCATA
GCTGCCAGCCCAATTGTGAGACCCTGAAGTGGACAGTGAATGGGGACACACGGGTTGGCCTGTTTGCTGT
GTGTGACATTCCTGCAGGTACAGAGCTGACTTTCAACTATAACCTTGATTGTTTGGGCAATGAAAAGACA
GTCTGTCGGTGTGGAGCCTCCAACTGTAGTGGGTTCCTTGGAGACAGACCAAAGACATCAGCATCCCTTT
CATCAGAGGAAAAGGGTAAAAAGGCCAAGAAGAAAACCAGAAGGCGCAGAGCCAAGGGTGAAGGAAAACG
GCAGTCAGAGGATGAGTGCTTCCGCTGTGGTGATGGTGGGCAGCTGGTGCTGTGTGACCGCAAGTTCTGT
ACCAAGGCCTACCACCTATCCTGCCTCGGTTTGGGCAAGCGGCCCTTTGGGAAGTGGGAATGTCCTTGGC
ATCACTGTGATGTATGTGGCAAACCTTCTACCTCATTTTGCCACCTCTGCCCCAACTCATTCTGTAAGGA
ACACCAAGATGGGACTGCTTTCCGTTCCACCCAGGATGGGCAGTCCTACTGCTGTGAGCATGACTTGAGG
GCAGACTCTTCAAGTAGCACCAAGACTGAGAAACCCTTTCCAGAATCACTGAAGTCAAAAGGAAAGAGGA
AGAAAAGGCGGTGCTGGCGAAGGGTCACAGATGGCAAATAG

Translation (1366 aa):
MEFSIRKSPLSVQKVVKCMKMKQTPEILGSANGKTQNCEVNHECSVFLSKAQLSNSLQEGVMQKFNGHDA
LPFLPAEKLKDLTSCVFNGEPGAHDTKLCFEAQEVKGIGTPPNTTPIKNGSPEIKLKITKTYMNGKPLFE
SSICGDGAADVSQSEENEQKSDNKTRRNRKRSIKYDSLLEQGLVEAALVSKISSPADKKIPVKKESCPNT
GRDRDLLLKYNVGDLVWSKVSGYPWWPCMVSADPLLHNHTKLKGQKKSARQYHVQFFGDAPERAWIFEKS
LVAFEGEEQFEKLCQESAKQAPTKAEKIKLLKPISGRLRAQWEMGIVQAEEAASMSIEERKAKFTFLYVG
DQLHLNPQVAKEAGIVTEPLGEMVDSSGASEEAAVDPGSVREEDIPTKRRRRTKRSSSAENQEGDPGTDK
STPPKMAEAEPKRGVGSPAGRKKSTGSAPRSRKGDSAAQFLVFCQKHRDEVVAEHPDASGEEIEELLGSQ
WSMLNEKQKARYNTKFSLMISAQSEEDSGNGNGKKRSHTKRADDPAEDVDVEDAPRKRLRADKHSLRKQR
ETITDKTARTSSYKAIEAASSLKSQAATKNLSDACKPLKKRNRASATASSALGFNKSSSPSASLTEHEVS
DSPGDEPSESPYESADETQTEASVSSKKSERGMAAKKEYVCQLCEKTGSLLLCEGPCCGAFHLACLGLSR
RPEGRFTCTECASGIHSCFVCKESKMEVKRCVVNQCGKFYHEACVKKYPLTVFESRGFRCPLHSCMSCHA
SNPSNPRPSKGKMMRCVRCPVAYHGGDACLAAGCSVIASNSIICTGHFTARKGKRHHTHVNVSWCFVCSK
GGSLLCCEACPAAFHPDCLNIEMPDGSWFCNDCRAGKKLHFQDIIWVKLGNYRWWPAEVCHPKNVPPNIQ
KMKHEIGEFPVFFFGSKDYYWTHQARVFPYMEGDRGSRYQGVRGIGRVFKNALQEAEARFNEVKLQREAR
ETQESERKPPPYKHIKVNKPYGKVQIYTADISEIPKCNCKPTDENPCGSDSECLNRMLMFECHPQVCPAG
EYCQNQCFTKRQYPETKIIKTDGKGWGLVAKRDIRKGEFVNEYVGELIDEEECMARIKYAHENDITHFYM
LTIDKDRIIDAGPKGNYSRFMNHSCQPNCETLKWTVNGDTRVGLFAVCDIPAGTELTFNYNLDCLGNEKT
VCRCGASNCSGFLGDRPKTSASLSSEEKGKKAKKKTRRRRAKGEGKRQSEDECFRCGDGGQLVLCDRKFC
TKAYHLSCLGLGKRPFGKWECPWHHCDVCGKPSTSFCHLCPNSFCKEHQDGTAFRSTQDGQSYCCEHDLR
ADSSSSTKTEKPFPESLKSKGKRKKRRCWRRVTDGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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