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Report for CCDS18137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18137.1 Public Mus musculus 4 Slc25a51 23 108 98 CCDS HistoryNCBI Gene:230125Re-query CCDS DB by CCDS ID:18137.1Re-query CCDS DB by GeneID:230125See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 18137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116341.3 ENSMUSP00000112044.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116341.3Link to Ensembl Protein Viewer:ENSMUSP00000112044.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116341Re-query CCDS DB by Protein ID:ENSMUSP00000112044
Original member Current member EBI ENSMUST00000132815.2 ENSMUSP00000134132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132815.2Link to Ensembl Protein Viewer:ENSMUSP00000134132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132815Re-query CCDS DB by Protein ID:ENSMUSP00000134132
Original member Current member NCBI NM_001009949.3 NP_001009949.3 Accepted alive Link to Nucleotide Sequence:NM_001009949.3Link to Protein Sequence:NP_001009949.3Re-query CCDS DB by Nucleotide ID:NM_001009949Re-query CCDS DB by Protein ID:NP_001009949Link to BLAST:NP_001009949.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001009949.3 298 Q5HZI9 298 100% 0 0

Chromosomal Locations for CCDS 18137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45399241 45400137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGATGGACTCCGAAGCACATGAGAAGAGGCCCCCAATGTTGACCTCTTCGAACCAGGACTTGTCACCTC
ACATTGCGGGCGTGGGAGACATGAAACATTACTTGTGTGGCTACTGCGCGGCCTTCAACAACGTGGCGAT
CACTTACCCGGTTCAGAAGATCCTCTTCCGGCAGCAGCTTTACGGCATCAAGACCCGGGATGCAGTCCTG
CAGCTGAGGAAGGATGGGTTCCGCAACTTGTACCGCGGAATCCTGCCCCCGCTGATGCAGAAGACGACCA
CGCTGGCACTTATGTTTGGTCTGTATGAGGACCTGTCGCGCCTGCTCCACAAGCACGTGAGCAGCGCTCC
CGAGTTTGCCACCCGTAGCGTGGCGGCGCTGCTGGCCGGGACGACGGAAGCCATTCTCACTCCATTCGAA
AGGGTTCAGACTTTGCTTCAGGACCACAAACATCACGATAAGTTCACAAACACTTACCAGGCCTTCAGGG
CGCTCAGATGCCATGGGATTGCAGAGTATTACCGAGGCATGGTGCCCATCCTTTTCCGGAATGGGTTCGG
CAATGTCCTTTTTTTTGGCCTTCGAGGGCCCATTAAGGAGAGCCTGCCTACTGCCACTACATACAGCGCC
CACCTGGTCAACGACTTCATCTGTGGAGGTGTACTCGGGGCCGTGCTGGGCTTCTTAAGCTTCCCCATTA
ACGTTGTCAAAGCTCGAATACAGTCTCAGATTGGCGGGCCATTCCTGTCTCTCCCCATGGTCTTCAAGAC
TATCTGGATAGAGCGGGACAGGAAGCTGATCAATCTCTTCAGAGGTGCACATCTGAATTACCACCGCTCT
CTCATCTCCTGGGGAATAATCAATGCCACTTACGAGTTTTTGTTAAAGATTGTATGA

Translation (298 aa):
MMDSEAHEKRPPMLTSSNQDLSPHIAGVGDMKHYLCGYCAAFNNVAITYPVQKILFRQQLYGIKTRDAVL
QLRKDGFRNLYRGILPPLMQKTTTLALMFGLYEDLSRLLHKHVSSAPEFATRSVAALLAGTTEAILTPFE
RVQTLLQDHKHHDKFTNTYQAFRALRCHGIAEYYRGMVPILFRNGFGNVLFFGLRGPIKESLPTATTYSA
HLVNDFICGGVLGAVLGFLSFPINVVKARIQSQIGGPFLSLPMVFKTIWIERDRKLINLFRGAHLNYHRS
LISWGIINATYEFLLKIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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