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Report for CCDS52785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52785.1 Public Mus musculus 9 4931429L15Rik 23 108 98 CCDS HistoryNCBI Gene:74361Re-query CCDS DB by CCDS ID:52785.1Re-query CCDS DB by GeneID:74361See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159565.7 ENSMUSP00000124991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159565.7Link to Ensembl Protein Viewer:ENSMUSP00000124991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159565Re-query CCDS DB by Protein ID:ENSMUSP00000124991
Original member Current member EBI ENSMUST00000172280.1 ENSMUSP00000128017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172280.1Link to Ensembl Protein Viewer:ENSMUSP00000128017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172280Re-query CCDS DB by Protein ID:ENSMUSP00000128017
Original member Current member NCBI NM_183104.2 NP_898927.2 Accepted alive Link to Nucleotide Sequence:NM_183104.2Link to Protein Sequence:NP_898927.2Re-query CCDS DB by Nucleotide ID:NM_183104Re-query CCDS DB by Protein ID:NP_898927Link to BLAST:NP_898927.2

Chromosomal Locations for CCDS 52785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46304021 46304076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46304163 46304301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46305025 46305198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46305705 46305858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46306822 46306960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46308755 46308992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46309327 46309445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46310225 46310313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46311556 46311587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1140 nt):
ATGCAGCTCAACCCTCTGTCTCAGGAAACTTGGAGACATGGACAACACCGTGCCTACTCCAATGTCACTG
AAAGGTTGTCTTGCTTGACTCTCCAGGAGCCCAGTGTCAGCCATCTCTACCAGATTCTCTCTCCTGGACC
CAGAAGATCCTTCTTGCTTGATGACTCTTTATCCAATTCCATCCAGCGAGAGTCCCTGGCTGTTCCCACT
GGACTTGAGGACAGCGCCTCCAGTGGTCAGCAGCAGGAGCAGCAGCAGCAGCACAGAGCTGTCCCTGAGG
ATCTGGAAGAGGAGGAAATCTCCCCAACAGACGTGAAATACCGCCTGCAGCTGCTCGAGGAGGCTCCATT
AGGGAGCATGAGTTCCAGTGTACACAGCCAGTGCCACAAGCCTGGGGGGATGCCATTCAGCAAAAACCAG
AGAGAGTGGTTCAAGCCCTGGACCGTGACAAACCCTGAGGCTGAGCTTTCCCATTCAGGTCACACCCAGG
GCAGAAGAGCAACACCAAGAGGACAGCTGAGACATGTGGAGTATGACAGCCAGGACCAGGACACCCAAGT
CCTAGTGTGGAGTCATGCCCTCTTCCCTGGTCTAGACAAGAGCAGTCAGGGAGTCATCCAATCCGCACAG
CACGTGTCGAGGCAGAAGGGAACAGAATCCGGTTGGTGGTCTATGACCCATGCACATCATGAGAAGAGCC
AGACAAAGCATGGGACAGCCTTTGTGGGGACAAAGAGAACTGCCAAGTTTAATGATGCTACAACAGCCAG
GATGCCCTCTCTGCCACCTCTCAAGCTCCTGGAGAAAAAAGGGAAGAATAGGTGTCCCCCCAACACAGCT
GGGGTCTTCCAAGGCAGGTTACAATCTGAAGTGACCAGCAAGCAGATCTTCCAAGACTGGAGAACTCAGT
CCCAAGGGCGCTTTGGAAGTAACGAAAAGCTCCCGGAGCCATTTGAGGATCAAGTCAACACGAAGGTAGC
ATACATGCCCTTGTTTTCTGAAAGAGTGAAGTTTGTAAGCCCCAGAACAGTTGCATCAAACCTGAGACAA
ATACATTCTCAACTGAGTAAGAAAAGCCAAGCAGGTCAGCTCCAGAATTTGGCCTCACAAAAGGAACACC
TGGAGAAAAGGACTGCCTGA

Translation (379 aa):
MQLNPLSQETWRHGQHRAYSNVTERLSCLTLQEPSVSHLYQILSPGPRRSFLLDDSLSNSIQRESLAVPT
GLEDSASSGQQQEQQQQHRAVPEDLEEEEISPTDVKYRLQLLEEAPLGSMSSSVHSQCHKPGGMPFSKNQ
REWFKPWTVTNPEAELSHSGHTQGRRATPRGQLRHVEYDSQDQDTQVLVWSHALFPGLDKSSQGVIQSAQ
HVSRQKGTESGWWSMTHAHHEKSQTKHGTAFVGTKRTAKFNDATTARMPSLPPLKLLEKKGKNRCPPNTA
GVFQGRLQSEVTSKQIFQDWRTQSQGRFGSNEKLPEPFEDQVNTKVAYMPLFSERVKFVSPRTVASNLRQ
IHSQLSKKSQAGQLQNLASQKEHLEKRTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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