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Report for CCDS18784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18784.1 Public Mus musculus 4 Ncmap 23 108 98 CCDS HistoryNCBI Gene:230822Re-query CCDS DB by CCDS ID:18784.1Re-query CCDS DB by GeneID:230822See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064481.14 ENSMUSP00000070780.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064481.14Link to Ensembl Protein Viewer:ENSMUSP00000070780.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000064481Re-query CCDS DB by Protein ID:ENSMUSP00000070780
Original member Current member EBI ENSMUST00000105857.7 ENSMUSP00000101483.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105857.7Link to Ensembl Protein Viewer:ENSMUSP00000101483.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105857Re-query CCDS DB by Protein ID:ENSMUSP00000101483
Original member Current member EBI ENSMUST00000105858.7 ENSMUSP00000101484.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105858.7Link to Ensembl Protein Viewer:ENSMUSP00000101484.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105858Re-query CCDS DB by Protein ID:ENSMUSP00000101484
Original member Current member EBI ENSMUST00000105859.7 ENSMUSP00000101485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105859.7Link to Ensembl Protein Viewer:ENSMUSP00000101485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105859Re-query CCDS DB by Protein ID:ENSMUSP00000101485
Original member Current member NCBI NM_001168498.1 NP_001161970.1 Accepted alive Link to Nucleotide Sequence:NM_001168498.1Link to Protein Sequence:NP_001161970.1Re-query CCDS DB by Nucleotide ID:NM_001168498Re-query CCDS DB by Protein ID:NP_001161970Link to BLAST:NP_001161970.1
Original member Current member NCBI NM_001168500.1 NP_001161972.1 Accepted alive Link to Nucleotide Sequence:NM_001168500.1Link to Protein Sequence:NP_001161972.1Re-query CCDS DB by Nucleotide ID:NM_001168500Re-query CCDS DB by Protein ID:NP_001161972Link to BLAST:NP_001161972.1
Original member Current member NCBI NM_001243305.1 NP_001230234.1 Accepted alive Link to Nucleotide Sequence:NM_001243305.1Link to Protein Sequence:NP_001230234.1Re-query CCDS DB by Nucleotide ID:NM_001243305Re-query CCDS DB by Protein ID:NP_001230234Link to BLAST:NP_001230234.1
Original member Current member NCBI NM_145555.2 NP_663530.1 Accepted alive Link to Nucleotide Sequence:NM_145555.2Link to Protein Sequence:NP_663530.1Re-query CCDS DB by Nucleotide ID:NM_145555Re-query CCDS DB by Protein ID:NP_663530Link to BLAST:NP_663530.1
Original member Current member NCBI NM_181047.1 NP_851390.1 Accepted alive Link to Nucleotide Sequence:NM_181047.1Link to Protein Sequence:NP_851390.1Re-query CCDS DB by Nucleotide ID:NM_181047Re-query CCDS DB by Protein ID:NP_851390Link to BLAST:NP_851390.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161970.1 100 Q99JS0 100 100% 0 0
NP_001161972.1 100 Q99JS0 100 100% 0 0
NP_001230234.1 100 Q99JS0 100 100% 0 0
NP_663530.1 100 Q99JS0 100 100% 0 0
NP_851390.1 100 Q99JS0 100 100% 0 0

Chromosomal Locations for CCDS 18784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135370569 135370710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135371877 135371961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135376991 135377066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (303 nt):
ATGACCACAGCCACCACTTTGGGGGACGCCGTCTTCTCGCTGAACATGACCAGGGGAGAGGACGCCCTGT
ATAAGAGCTCTGGAGCCATCGTGGCTGCCATTGTGGTGGTTGTCATCATCATTGTCACCTTGGTGCTGAT
CCTGCTGAAGATGTACAACAGGAGAATGAGGACCAGGCGGGAGCTGGAGCCCAAGAGCCCAAAGCCACCT
GTCCCTCCTGCCCTGGACCCCAGCAGCAATGGCAGCCAGCAGCCTGCTACTGTGACCTTCGACCCTGCCA
ATGTCCATGTGGAGACTCGGTGA

Translation (100 aa):
MTTATTLGDAVFSLNMTRGEDALYKSSGAIVAAIVVVVIIIVTLVLILLKMYNRRMRTRRELEPKSPKPP
VPPALDPSSNGSQQPATVTFDPANVHVETR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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