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Report for CCDS49345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49345.1 Public Mus musculus 13 Marveld2 23 108 98 CCDS HistoryNCBI Gene:218518Re-query CCDS DB by CCDS ID:49345.1Re-query CCDS DB by GeneID:218518See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163163.8 ENSMUSP00000129990.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163163.8Link to Ensembl Protein Viewer:ENSMUSP00000129990.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163163Re-query CCDS DB by Protein ID:ENSMUSP00000129990
Original member Current member NCBI NM_178410.3 NP_848497.2 Accepted alive Link to Nucleotide Sequence:NM_178410.3Link to Protein Sequence:NP_848497.2Re-query CCDS DB by Nucleotide ID:NM_178410Re-query CCDS DB by Protein ID:NP_848497Link to BLAST:NP_848497.2

Chromosomal Locations for CCDS 49345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 100597289 100597411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100597802 100597852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100600461 100600632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100600889 100601037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100607777 100607812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 100616605 100616910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (837 nt):
ATGCGGCGACGGGACGCCGAGCCCGCGGGGTGGGCCTTTCGCCCTGGGCACACATCCCCGGAGCCGCCTC
CCTCCCGCGGCCAGGCTGAAGCGGGAGCACGCGGGCGCGCCGGGCTCCGGGGGCGGCGTGGGCGGGTTTC
GCTGCAGCGACAGGTGCGGCCGGCTGGACCGCCGCCGTCCTTCCGGGCGCCTGGTGGCGCCGCCCTCGCC
ACTTTCCCGGCTGGCCTGACCGAGACAACGGCCACCTTGGGGCGGAAGCCAGAGTGGATTTTCCAGAGAA
GAAAGCGAAGGCGGGACACGCACCGGATAAATGACCCGTCGTTGTCATCGAAAAGGAAAATGTGTGAAGC
GGCCATCAGTGATCGACAGAGGGATCAGGAAGTTAATGTCAAAGACTTGAGAACAACAACTAAAATGACT
CCTGAGCTGTTGAGTGGGCACATCCCTCCCGGCCACATTCCGAAGCCTATCGTGATGCCTGACTACGTGG
CAAAATATCCTGTGATTCAGACAGATGACGATCGAGAACGCTATAAGGCTGTGTTCCAAGACCAGTTTTC
AGAGTACAAAGAGCTGTCTGCGGAAGTGCAGGCCATCCTGAGGAAGTTTGACGAGCTGGACACAGTGATG
AGCAGGCTCCCACATCATTCTGAAAACCGCCAGGAACACGAGAGAATTTCAAGAATTCATGAAGAGTTTA
GGAAAAAGAAGAATGACCCTTCGTTTCTGGAAAAAAAGGAGCGTTGCGATTACCTCAAGAACAAACTCTC
TCACATAAAGCAAAGAATTCAAGAATACGATAAAGTGATGAATTGGGATACGCAAGGTTATCCCTAG

Translation (278 aa):
MRRRDAEPAGWAFRPGHTSPEPPPSRGQAEAGARGRAGLRGRRGRVSLQRQVRPAGPPPSFRAPGGAALA
TFPAGLTETTATLGRKPEWIFQRRKRRRDTHRINDPSLSSKRKMCEAAISDRQRDQEVNVKDLRTTTKMT
PELLSGHIPPGHIPKPIVMPDYVAKYPVIQTDDDRERYKAVFQDQFSEYKELSAEVQAILRKFDELDTVM
SRLPHHSENRQEHERISRIHEEFRKKKNDPSFLEKKERCDYLKNKLSHIKQRIQEYDKVMNWDTQGYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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