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Report for CCDS24368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24368.1 Public Mus musculus 11 4921536K21Rik 23 108 98 CCDS HistoryNCBI Gene:67430Re-query CCDS DB by CCDS ID:24368.1Re-query CCDS DB by GeneID:67430See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020712.4 ENSMUSP00000020712.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020712.4Link to Ensembl Protein Viewer:ENSMUSP00000020712.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020712Re-query CCDS DB by Protein ID:ENSMUSP00000020712
Original member Current member NCBI NM_026150.3 NP_080426.1 Accepted alive Link to Nucleotide Sequence:NM_026150.3Link to Protein Sequence:NP_080426.1Re-query CCDS DB by Nucleotide ID:NM_026150Re-query CCDS DB by Protein ID:NP_080426Link to BLAST:NP_080426.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080426.1 168 Q9CR34-1 168 100% 0 0

Chromosomal Locations for CCDS 24368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3888160 3888309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3890039 3890147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3894840 3895087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGTTTTAGGTCTTGCTAGCTTTCCTGAGTCGCTCTCTAGCCAGTCAGAGACCGCTACACAGCCCAGAA
GGCCTTCAGTCAAATGGGACTTGGGCTCGGATTACAGGAAAGGTACCGAAGAGACTACCGCTTCTGGTTC
GAACTTCCGGCGCGAGAGACTGGACAGCCAGCCGGATCTTGGCCTCCACGTCCAACCACAGATCTACTTC
CTGCGGCCGCGGTCCCCACTCCCCAAGTTGTTATTCAGCTTAATGAATACCAATGATGCAAACGTGAAGA
AGCTGTTGCCCAAGAGCCATTTATCTCGGGTGATTATTCGTGACAACCTCAACGCACAGCGTATCTGCGA
GATGGAGATGAAAGCCTCTGACAAGACCAAGAGGAAGATGAGCTACTTGTACGACCACCTGAAAAAGAAG
TTCATGATGGACCAGCTGAGAAAGATGATTCGCTGGAGGCGCGATTCCCAGAGCACCCAGGACTACTTGG
ATAAGGAACGGGTCTGA

Translation (168 aa):
MVLGLASFPESLSSQSETATQPRRPSVKWDLGSDYRKGTEETTASGSNFRRERLDSQPDLGLHVQPQIYF
LRPRSPLPKLLFSLMNTNDANVKKLLPKSHLSRVIIRDNLNAQRICEMEMKASDKTKRKMSYLYDHLKKK
FMMDQLRKMIRWRRDSQSTQDYLDKERV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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