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Report for CCDS89851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89851.1 Public Mus musculus 4 Pramel23 23 108 98 CCDS HistoryNCBI Gene:277667Re-query CCDS DB by CCDS ID:89851.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073532.4 ENSMUSP00000073224.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073532.4Link to Ensembl Protein Viewer:ENSMUSP00000073224.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000073532Re-query CCDS DB by Protein ID:ENSMUSP00000073224
Original member Current member NCBI NM_001356572.1 NP_001343501.1 Accepted alive Link to Nucleotide Sequence:NM_001356572.1Link to Protein Sequence:NP_001343501.1Re-query CCDS DB by Nucleotide ID:NM_001356572Re-query CCDS DB by Protein ID:NP_001343501Link to BLAST:NP_001343501.1

Chromosomal Locations for CCDS 89851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 143696850 143697360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143698015 143698584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 143699085 143699371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGAATGTCAACTCTCCACCCACCCTCATGAAACTGGCAAGTCAGAGGCTACTGAGGGAGGAGGCCTTGG
CCATTTCTGCTCTCAAGGACCTACCCAATATGCTGTTCCCAGTGATGTTTGAGGAGGCCTTCATTAATGG
TCATACTAAGATCTTGAAGGCCATGATACCCTTGTGGCCCTTCCCATACTTTTCTTTAGGAATGATGATA
AAGAACCTGACCCTAGATACATTGAAGGCTGTTCTTCAGGAAATAGATATACTTATTTCAAAAGTGGTGC
ATTCCAGTAGGTGCAAACTCAAAGAGATCAAATGGAAGAATACAGACTATGGTTTGCAAGGAATATGGCC
TGGGTCCCATGAATTTGATGGCTTATCAGAGTTCATGGAACAGAAGCAGCCTGACTGTGGGGTGAAGAAA
GAATTGAAGGTGATAACTCATCTCAAACTCATGGAGGGCAGCCTTGATGAATGTGCTACATACTTGTTGC
AGTGGGCCCAGCAGAGAAAAGATTCAATTCATCTATGCTGTAGAAAGCTGAAGATTCAGGGCTCAATCAA
CGCCACAGTTATAGAAATCTTCAAAATTGTACATGCAGACTGTATACAAGAGCTGGAGCTATGTTGTCTT
TGCCTGGAAGATTTGGATTTTCTTAACCCTTACCTGAAACAGATAAACAACCTTATTAGACTCAAACTAG
ATGAAATCAAAGGTACTGTCAGTATGGGTGAATCTAGAAATATTGATGAGGAGAAAGTGATCACATTGAT
ATCTCAACTTCCCACACTCCAACATCTCGAGAAACTCTGTATAAATGATGTCTCTTTTATAGAAGGCAAC
CTGAAAGAATGCCTCAGGTGCCTGAAAAAGACCTTGGAGATACTTTGCATCACTAACTGTTACCTCTTAC
AGTCAGACTTGGATTACCTGCCCTACTGCCTGAATATTTTGGAGCTCAAATGTCTGGACTTTAGTAATAT
ACCTTTAAGTCATTTATTCCTTGAGCATCTTAGATTTCTTTTTGAGAGAGTTAGACATACCCTGGAATGC
CCGATATTGAAGTCATGTGAAATGGGAGAATCTCAGTTCAACAGCCTACTGCCTGCCATAAGTCAGTGTT
GCCAACTCACAGAAGTCAATTTCTATGATAATGAACTCTCTCTGATTTTCCTGAAAAAATTTCTACACCA
CACAGCCAAGCTTAGCCAGCTAACTTATGAGCTGTACCCTGCCCCTCTGGAGTGCTATGATAACAGAGAT
ATAATACTATCACACAGATTAGAAAATTTTTGTCCTGAGCTCCTGAATATACTCAGGGCCAAAAAGACAG
CCCAAGGAGGTCACCTTTGCTACAACCCAATGCTATAA

Translation (455 aa):
MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMI
KNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKK
ELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCL
CLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGN
LKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLEC
PILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRD
IILSHRLENFCPELLNILRAKKTAQGGHLCYNPML


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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