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Report for CCDS6582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6582.1 Public Homo sapiens 9 SIT1 24 110 108 CCDS HistoryNCBI Gene:27240Re-query CCDS DB by CCDS ID:6582.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000259608.8 ENSP00000259608.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000259608.8Link to Ensembl Protein Viewer:ENSP00000259608.3Re-query CCDS DB by Nucleotide ID:ENST00000259608Re-query CCDS DB by Protein ID:ENSP00000259608
Original member Current member NCBI NM_014450.3 NP_055265.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014450.3Link to Protein Sequence:NP_055265.1Re-query CCDS DB by Nucleotide ID:NM_014450Re-query CCDS DB by Protein ID:NP_055265Link to BLAST:NP_055265.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055265.1 196 Q9Y3P8 196 100% 0 0

Chromosomal Locations for CCDS 6582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35649848 35650081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35650184 35650245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35650357 35650415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35650502 35650637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35650754 35650853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGAACCAGGCTGACCCTCGGCTCAGAGCAGTGTGCTTGTGGACTCTCACATCTGCAGCCATGAGCAGAG
GCGACAACTGCACGGATCTACTCGCACTGGGAATCCCCTCCATAACCCAGGCCTGGGGACTGTGGGTCCT
CTTAGGGGCTGTGACGCTGCTATTTCTCATCTCGCTGGCTGCACACTTGTCCCAGTGGACCAGGGGCCGG
AGCAGGAGCCATCCGGGGCAGGGACGCTCTGGAGAGTCTGTGGAAGAGGTCCCGCTGTATGGGAACCTGC
ATTATCTACAGACAGGACGGCTGTCTCAAGACCCAGAGCCAGACCAGCAGGATCCAACTCTTGGAGGCCC
TGCCAGGGCTGCAGAGGAGGTGATGTGCTATACCAGCCTGCAGCTGCGGCCTCCTCAGGGTCGGATCCCC
GGTCCTGGAACCCCCGTCAAGTACTCGGAGGTGGTGCTGGACTCTGAGCCAAAGTCCCAGGCCTCGGGCC
CCGAGCCGGAGCTCTATGCCTCAGTATGTGCCCAGACCCGCAGGGCCCGGGCCTCCTTCCCGGATCAGGC
CTATGCCAACAGCCAGCCTGCAGCCAGCTGA

Translation (196 aa):
MNQADPRLRAVCLWTLTSAAMSRGDNCTDLLALGIPSITQAWGLWVLLGAVTLLFLISLAAHLSQWTRGR
SRSHPGQGRSGESVEEVPLYGNLHYLQTGRLSQDPEPDQQDPTLGGPARAAEEVMCYTSLQLRPPQGRIP
GPGTPVKYSEVVLDSEPKSQASGPEPELYASVCAQTRRARASFPDQAYANSQPAAS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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