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Report for CCDS28546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28546.1 Public Mus musculus 17 Pgap6 23 108 98 CCDS HistoryNCBI Gene:60455Re-query CCDS DB by CCDS ID:28546.1Re-query CCDS DB by GeneID:60455See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025010.13 ENSMUSP00000025010.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025010.13Link to Ensembl Protein Viewer:ENSMUSP00000025010.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025010Re-query CCDS DB by Protein ID:ENSMUSP00000025010
Original member Current member NCBI NM_021793.2 NP_068565.1 Accepted alive Link to Nucleotide Sequence:NM_021793.2Link to Protein Sequence:NP_068565.1Re-query CCDS DB by Nucleotide ID:NM_021793Re-query CCDS DB by Protein ID:NP_068565Link to BLAST:NP_068565.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068565.1 769 Q9ESN3-1 769 100% 0 0

Chromosomal Locations for CCDS 28546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26113450 26113567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26116759 26116933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26117019 26117226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26117411 26117538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26117739 26118007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26118110 26118429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26118862 26118952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26119033 26119156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26119399 26119535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26120284 26120462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26120539 26120685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26121540 26121656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26121938 26122234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2310 nt):
ATGGGCCGGGTTGGGGCCGGGGGCACAGCGCGGGAGGCAGCGACCGGGTCACTGCTGCTGCTGCTGCTGC
TCCTGGCTCGGCCTCCGCCTGCCGCCGCCAGCAACAGCAAGGAGAGCGAGGCTGGACTGGTATCTGAACA
CTTCTCCCAGGCCCCACAGAAGCTGTCCTTCTACAGCTGGTATGGCAGCACCCGGCTCTTCCACTTCCGC
GTGCCCCCGGACACTGTGCTGCTCCGCTGGCTGCTGCACGTGTCCCAGGGAAGTCCCTCATGCACTGACG
AAGAGATCACAGTGCATTTCCGCTATGGCGCCCCTCCTGTCATCAACCCTCTGGGCACCAGCTTCCCTGA
CAACACCTTGAGCCACGCCTCCTTCCATATCAGGGCATTGTTGAGCACCTTGATGCTGGACAACACCTCA
GTCAACATCTCCCACCCTGCCCCTGGGGACTGGTTCCTGGTTGCTCACCTCCCTCCCTCCTCCCAGAAGA
TCCAGGTGAAGGGCTTTGTTCCAACCTGTGCCTACATCTTCCAGCCTGATATGCTGGTAATGAGGGTGGT
TGAAGTCTCCACCCTAGAGCCTGATGTTCCCCTCCCACAGACGCTGCTCTCCTACCCCAGCTACCTCAAG
ATCTTTGTCCCTGAATACACCCAGGAGCTTCGGTTGGAACTGCAGGGCTGTGTGTCCAGTGTGAGCCCCG
GCTGCCCAGTACGTGTCACAGTGGGGGCAACCACCCTGCCTAGAAACTTCCAGAGGGTGCTGACTTGCAC
TGGCCTCGCTCCATCCTGCCATTTGCTACTGTCCTCTCCACCCTGGGGCCGGTGGTTACAAGTGACATTT
GAGAGCCTGGCTGAACCTCATGTGACAGTGGGCTTTACTGCTAAAGCTGTCTTTACAGTATGTAGGCCAT
GGAGTGTGACCATCCATCATCTTATACAAAACAACCCAAACCAGACTTATGATACCTCTGCAATCCAGCT
GTCCCAAAGCGCTGTCCACCGGGACCTGGGCAGGAGTAGCAGGGTGGACAGTGGCCCCTTCTGTCTCCTG
AACTATCCAGTCCTGAGGGAGGACACAGATGTGGTGTCTGTACACTTCCAGCCCCTGAATGGGGCCTTCG
TGCTAGTGCATTCAAGCATGCCTTCTGTAATGCAGCTCCGCCTTGATACAGGCATGGACAGCGGAGGCTC
CTTCATCATCGTCCTGAGGACTAACAAGACAGAGGTCACAAATGGCACCTTGGTAGCAGCTTGTGTGAAT
GCTGCCTCCCCTTTCCTCAGCTTCAACACTTCACTCAACTGCACCACAGCCTTTTTCCAGGGCTACCCCA
TGTTTCTGAGAGCCTCATCTCACATGGCCAACCTCATCATGCCCTTCCCGGAGACAGACAACTGGTACCT
CTCCCTGCAGCTTGTGTGCCCTGAGAGTCCTGAGGATTGTGAACAGGCTGTGGTTCGCGTGGAGACCATC
TTGTATCTGGTGCCCTGTTTGAATGACTGTGGGCCCTACGGCCAGTGTCTCCTGCTCCGTAGATACGGCT
ATGTGTACGCAGGCTGCAGCTGCAAGGCAGGTTGGCGTGGGTGGAGCTGCACCGACAACAGCACAGCGCA
GACCGTAGCCCAGCAGAGGGCAGCAGCGCTTCTGCTCACGCTCAGCAACCTCATGTTCCTGGCCCCCATT
GCTATATCCCTGCACCGTTCCTTCCTGGTCGAGGCCTCTGTCTACTTTTACACCATGTTCTTCTCCACGT
TCTACCACGCCTGTGACCAACCCGGGGAGGCAGTGTTGTGCATCCTCAGTTATGACACGCTACAGTATTG
CGACTTTCTGGGCTCTGGGGCGTCCACCTGGGTGACCATTCTTTGCATGGCCCGTCTGAAGACAATCCTG
AAACAGGTACTACTTGTCCTCGGCACACTCGTCATCGCCATGTCCTTGCAGATGGATCGCAGGGGCATCT
GGAACTTGATGGGACCTTGCGTCTTTGCTTTTGTGATCATGGCCTCCATGTGGATATACCGCTGTGGGCA
CCGGGGACAGTGCTACCCAACCTCCTGGCAGCGCTGGGTCTTCTACCTCCTGCCTGGCATCTCCATGGCT
TCCGTTGGCATCGCCATGTATACTTCAATGATGACCAGTGACAATTACTACTACACCCACAGCATTTGGC
ACATCCTACTGGCTGGTAGTGCAGCATTTCTTCTGCCACCACGAGAGGAAAAAGCTGGGTCCTGGGCCTG
TTTGCAGAAGTTCCCTTGTCACTACCAGATCTGCAGGAATGATCGGGATGAGTTGTACACAGTGACCTGA

Translation (769 aa):
MGRVGAGGTAREAATGSLLLLLLLLARPPPAAASNSKESEAGLVSEHFSQAPQKLSFYSWYGSTRLFHFR
VPPDTVLLRWLLHVSQGSPSCTDEEITVHFRYGAPPVINPLGTSFPDNTLSHASFHIRALLSTLMLDNTS
VNISHPAPGDWFLVAHLPPSSQKIQVKGFVPTCAYIFQPDMLVMRVVEVSTLEPDVPLPQTLLSYPSYLK
IFVPEYTQELRLELQGCVSSVSPGCPVRVTVGATTLPRNFQRVLTCTGLAPSCHLLLSSPPWGRWLQVTF
ESLAEPHVTVGFTAKAVFTVCRPWSVTIHHLIQNNPNQTYDTSAIQLSQSAVHRDLGRSSRVDSGPFCLL
NYPVLREDTDVVSVHFQPLNGAFVLVHSSMPSVMQLRLDTGMDSGGSFIIVLRTNKTEVTNGTLVAACVN
AASPFLSFNTSLNCTTAFFQGYPMFLRASSHMANLIMPFPETDNWYLSLQLVCPESPEDCEQAVVRVETI
LYLVPCLNDCGPYGQCLLLRRYGYVYAGCSCKAGWRGWSCTDNSTAQTVAQQRAAALLLTLSNLMFLAPI
AISLHRSFLVEASVYFYTMFFSTFYHACDQPGEAVLCILSYDTLQYCDFLGSGASTWVTILCMARLKTIL
KQVLLVLGTLVIAMSLQMDRRGIWNLMGPCVFAFVIMASMWIYRCGHRGQCYPTSWQRWVFYLLPGISMA
SVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLLPPREEKAGSWACLQKFPCHYQICRNDRDELYTVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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