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Report for CCDS30415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30415.1 Public Mus musculus X Tceal8 23 108 98 CCDS HistoryNCBI Gene:66684Re-query CCDS DB by CCDS ID:30415.1Re-query CCDS DB by GeneID:66684See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060101.9 ENSMUSP00000056189.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060101.9Link to Ensembl Protein Viewer:ENSMUSP00000056189.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000060101Re-query CCDS DB by Protein ID:ENSMUSP00000056189
Original member Current member EBI ENSMUST00000163584.7 ENSMUSP00000129591.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163584.7Link to Ensembl Protein Viewer:ENSMUSP00000129591.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163584Re-query CCDS DB by Protein ID:ENSMUSP00000129591
Original member Current member NCBI NM_001168578.1 NP_001162050.1 Accepted alive Link to Nucleotide Sequence:NM_001168578.1Link to Protein Sequence:NP_001162050.1Re-query CCDS DB by Nucleotide ID:NM_001168578Re-query CCDS DB by Protein ID:NP_001162050Link to BLAST:NP_001162050.1
Original member Current member NCBI NM_025703.3 NP_079979.2 Accepted alive Link to Nucleotide Sequence:NM_025703.3Link to Protein Sequence:NP_079979.2Re-query CCDS DB by Nucleotide ID:NM_025703Re-query CCDS DB by Protein ID:NP_079979Link to BLAST:NP_079979.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001162050.1 117 Q9CZY2 117 100% 0 0
NP_079979.2 117 Q9CZY2 117 100% 0 0

Chromosomal Locations for CCDS 30415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 136170669 136171022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGCAAAAGTCTTGTGACGAGAACGAAGGAACACCCCAGAACACACCAAAAGCAGACGAAGGCCATCCTT
CAGAAGATCCACCACAGCAGGCAGGAGAAACTCTTCAGGCTTCTGGAGAAAATGTGAGGGAGGAAACTGA
AGGGAGCCATAGAGGAGAGCCTGCTGAACCCAGCCCAGAGCCCAAAGAGGACACTCCCGCAAGGCATCTG
AACCCCGAAGAAGTGATAAGAGGCGTAGATGAGTTGGAAAGGCTTAGGGAAGAGATAAGAAGAGTAAGAA
ACAAGTTCGTGTTGATGCATTGGAAGCAAAGACATTCCCGAAGCCGTCCTTACCCTGTGTGCTTCAGGCC
TTGA

Translation (117 aa):
MQKSCDENEGTPQNTPKADEGHPSEDPPQQAGETLQASGENVREETEGSHRGEPAEPSPEPKEDTPARHL
NPEEVIRGVDELERLREEIRRVRNKFVLMHWKQRHSRSRPYPVCFRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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