NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39513.1 Public Mus musculus 6 Vamp5 23 108 98 CCDS HistoryNCBI Gene:53620Re-query CCDS DB by CCDS ID:39513.1Re-query CCDS DB by GeneID:53620See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074231.5 ENSMUSP00000073852.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074231.5Link to Ensembl Protein Viewer:ENSMUSP00000073852.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000074231Re-query CCDS DB by Protein ID:ENSMUSP00000073852
Original member Current member EBI ENSMUST00000101285.9 ENSMUSP00000098843.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101285.9Link to Ensembl Protein Viewer:ENSMUSP00000098843.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101285Re-query CCDS DB by Protein ID:ENSMUSP00000098843
Original member Current member NCBI NM_001080742.2 NP_001074211.1 Accepted alive Link to Nucleotide Sequence:NM_001080742.2Link to Protein Sequence:NP_001074211.1Re-query CCDS DB by Nucleotide ID:NM_001080742Re-query CCDS DB by Protein ID:NP_001074211Link to BLAST:NP_001074211.1
Original member Current member NCBI NM_016872.4 NP_058568.1 Accepted alive Link to Nucleotide Sequence:NM_016872.4Link to Protein Sequence:NP_058568.1Re-query CCDS DB by Nucleotide ID:NM_016872Re-query CCDS DB by Protein ID:NP_058568Link to BLAST:NP_058568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074211.1 102 Q9Z2P8 102 100% 0 0
NP_058568.1 102 Q9Z2P8 102 100% 0 0

Chromosomal Locations for CCDS 39513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72369303 72369470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72370194 72370331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72380381 72380383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGGCAGGGAAAGAACTGAAGCAATGCCAGCAGCAGGCGGACGAAGTGACGGAAATCATGCTCAACAATT
TCGACAAGGTCCTGGAGCGTCACGGCAAGCTGGCGGAGTTGGAGCAGCGTTCAGACCAGCTCCTGGACAT
GAGTTCGGCCTTCAGCAAGACAACCAAGACTTTAGCCCAGCAGAAGCGCTGGGAAAATATCCGGTGCCGG
GTCTACTTGGGGCTAGCAGTGGCTGTTGGCCTGCTCATCATCCTGATTGTGTTGCTGGTCGTCTTTCTTC
CGAGTGGTGGGGACAGTAGTAAACCATAG

Translation (102 aa):
MAGKELKQCQQQADEVTEIMLNNFDKVLERHGKLAELEQRSDQLLDMSSAFSKTTKTLAQQKRWENIRCR
VYLGLAVAVGLLIILIVLLVVFLPSGGDSSKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH