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Report for CCDS48855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48855.1 Public Mus musculus 11 Phf12 23 108 98 CCDS HistoryNCBI Gene:268448Re-query CCDS DB by CCDS ID:48855.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049167.13 ENSMUSP00000044990.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049167.13Link to Ensembl Protein Viewer:ENSMUSP00000044990.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049167Re-query CCDS DB by Protein ID:ENSMUSP00000044990
Original member Current member NCBI NM_174852.3 NP_777277.2 Accepted alive Link to Nucleotide Sequence:NM_174852.3Link to Protein Sequence:NP_777277.2Re-query CCDS DB by Nucleotide ID:NM_174852Re-query CCDS DB by Protein ID:NP_777277Link to BLAST:NP_777277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777277.2 1003 Q5SPL2-1 1003 100% 0 0

Chromosomal Locations for CCDS 48855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 77983312 77983377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 77984016 77984197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78006727 78006799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78009401 78009794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78013171 78013291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78015498 78015630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78018065 78018229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78022358 78022516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78023027 78023819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78024961 78025086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78025885 78026028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78027320 78027418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78028227 78028309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78028843 78028981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 78029317 78029651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3012 nt):
ATGTGGGAGAAAATGGAGACCAAGACGATCGTGTACGACTTGGACACGTCGGGGGGGCTGATGGAGCAAA
TCCAAGCTCTGCTGGCTCCCCCCAAGACGGACGAGGCAGAAAAGCGGAGTCGGAAGCCCGAGAAGGAGTC
CCGGAGAAGCGGCAGGGCCACCAACCACGACAGCTGCGATAGCTGCAAGGAAGGTGGGGATCTCTTGTGC
TGCGATCACTGCCCTGCCGCCTTCCACCTCCAGTGCTGTAACCCTCCACTGAGTGAAGAGATGTTGCCTC
CTGGGGAGTGGATGTGTCACCGGTGTACTGTCCGCCGAAAGAAACGAGAGCAGAAAAAGGAGCTTGGCCA
TGTCAATGGACTGGTGGACAAGTCTAGCAAACGGACTACATCCCCCAGCAGTGACACTGACTTGTTGGAC
AGACCAGCTAGCAAAACTGAACTCAAGGCCATTGCCCATGCCCGGATCCTGGAAAGGAGAGCCAGCCGGC
CTGGCACCCCCACATCCAACGCCAGCACAGAGACCCCCACCTCTGAGCATAATGACGTCGATGAGGACAT
CGTTGACGTGGACGAGGAGCCAGTCGCAGCAGAGCCGGACTATGTGCAGCCCCAGCTGCGGCGGCCTTTT
GAGCTGCTGATTGCTGCTGCCATGGAGCGGAACCCTACCCAGTTTCAGTTGCCCAACGAACTGACCTGTA
CCACTGCACTACCAGGTTCTAGCAAACGGAGAAGAAAGGAAGAAACCACAGGGAAGAATGTAAAAAGGAC
ACAGCATGAGTTAGACCATAATGGTCTTGTTCCCTTGCCGGTCAAAGTCTGCTTCACATGTAACAGGAGT
TGTCGAGTGGCCCCCCTCATCCAGTGTGACTATTGCCCGCTTCTGTTTCACATGGACTGCCTCGAGCCCC
CGCTCACTGCCATGCCCCTGGGCAGATGGATGTGTCCGAATCACATCGAACATGTGGTGCTGAACCAGAA
GAACCTGACTCTGAGCAATCGGTGCCAGGTGTTTGATCGGTTCCAGGACACCATTTCACAACATGTTGTC
AAAGTAGATTTCCTGAACCGAATCCACAAGAAGCACCCTCCTAACCGCCGTGTGCTCCAGTCTGTCAAAA
GAAGAAGCTTGAAGGTTCCTGATGCTATAAAATCTCAGTACCAGTTTCCACCCCCGCTTATTGCACCCGC
GGCCATTCGGGACGGGGAGCTGATCTGCAGTGGGGTCCCTGAGGAATCACAAACGCACCTTTTGAACTCT
GAGCACTTAGCCACTCAGGCAGAGCAGCAGGAGTGGCTCTGTAGTGTTGTTGCGCTCCAGTGCAGCATAT
TGAAACATTTATCTGCTAAGCAGATGCCTTCGCCTTGGGACTCTGAACAGACAGAGAAGGCTGATATTAA
GCCTGTTATTGTGACTGACAGCTCAATCACCACCTCCCTGCAAACCGCTGACAAGGCACCTCTTCCTTCC
CACTACCCTTTGTCCTGCCCCTCAGCAGTGAGCACCCAAAATTCCCTGGGCTGCTCTCCACCCCACCAAC
CCCCAACCCTAGAAGACATCAGCTGCAGTTCTTGTGTGGAAAAGTCCAAGAAAGCCCCTTGTGGGACTGC
CAATGGGCCGGTGAACACAGAGATAAAAGCCAATGGCCCACACCTCTACAGCAGCCCCACTGATTCCACG
GATCCCCGGCGACTTCCTGGCGCCAACACCCCTTTACCAGGCCTCACACACCGGCAAGGCTGGCCCCGGC
CCCTCACGCCACCATCGGCTGGGGGACTTCAGAACCACGTCGGCATCATTGTGAAGACAGAAAATGCCAC
TGGCCCCAGCTCTTGTCCCCAGAGGAGTTTGGTACCCGTCCCAAGCCTGCCCCCTTCCATTCCCAGCTCT
TGTGCCAGCATCGAGAACACCAGCACTTTGCATAGAAAGACTGTCCAGTCACAGATAGGACCTTCGTCGA
CAGAATCGAGGCCTCTGGGCTCACCCCCAAATGCCACCCGGGTGCTCACTCCCCCCCAGGCTGCAGGAGA
CAGTATCTTGGCCACAGGTGCCAACCAACGATTCTGCTCACCAGCGCCATCATCAGATGGCAAGGTCAGC
CCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGG
ACCTCACCAACTCACTTCGAGCATTTATGGATGTCAACGGAGAAATCGAGATAAATATGTTGGATGAGAA
GCTGATCAAGTTTCTGGCCTTGCAGAGAGTACATCAGCTTTTCCCTTCCCGGGTCCAAGCTTCACCGGGC
AATGTTGGGACACATCCGCTGGCTTCTGGAGGGCACCACCCAGAAGTGCAAAGAAAGGAGGTACAGGCCC
GAGCTGTGTTCTGCCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGG
GACAGGAGCTGACATGGATGTGTGCCTTACAAACTATGGTCACTGTAACTACGTGTCCGGGAAACATGCC
TGCATATTCTACGATGAGAATACCAAACATTATGAGCTGTTAAACTACAGTGAGCATGGGACAACGGTGG
ACAATGTGCTGTATTCATGTGACTTCTCTGAGAAGACCCCGCCAACCCCCCCAAGCAGTATTGTTGCCAA
AGTACAGAGTGTCATCAGGCGCCGCCGACACCAGAAACAGGATGAAGAGCCAAGTGAGGAGGCAGCCATG
ATGAGTTCCCAGGCCCAGGGGCCACAGCGGAGACCCTGCAATTGCAAAGCCAGCAGCTCAAGCTTGATTG
GGGGCAGTGGGGCCGGCTGGGAGGGCACAGCCTTACTCCACCATGGCAGCTACATCAAGCTGGGCTGCCT
GCAGTTTGTCTTCAGCATCACTGAGTTTGCGACCAAACAGCCCAAAGGCGATGCCAGCCTGCTGCAGGAT
GGGGTCTTGGCTGAGAAACTCTCTCTCAAGCCCCATCAGGGCCCTGTGCTGCGCTCCAACTCCGTTCCCT
AG

Translation (1003 aa):
MWEKMETKTIVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPEKESRRSGRATNHDSCDSCKEGGDLLC
CDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRCTVRRKKREQKKELGHVNGLVDKSSKRTTSPSSDTDLLD
RPASKTELKAIAHARILERRASRPGTPTSNASTETPTSEHNDVDEDIVDVDEEPVAAEPDYVQPQLRRPF
ELLIAAAMERNPTQFQLPNELTCTTALPGSSKRRRKEETTGKNVKRTQHELDHNGLVPLPVKVCFTCNRS
CRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNLTLSNRCQVFDRFQDTISQHVV
KVDFLNRIHKKHPPNRRVLQSVKRRSLKVPDAIKSQYQFPPPLIAPAAIRDGELICSGVPEESQTHLLNS
EHLATQAEQQEWLCSVVALQCSILKHLSAKQMPSPWDSEQTEKADIKPVIVTDSSITTSLQTADKAPLPS
HYPLSCPSAVSTQNSLGCSPPHQPPTLEDISCSSCVEKSKKAPCGTANGPVNTEIKANGPHLYSSPTDST
DPRRLPGANTPLPGLTHRQGWPRPLTPPSAGGLQNHVGIIVKTENATGPSSCPQRSLVPVPSLPPSIPSS
CASIENTSTLHRKTVQSQIGPSSTESRPLGSPPNATRVLTPPQAAGDSILATGANQRFCSPAPSSDGKVS
PGTLSIGSALTVPSFPANSTAMVDLTNSLRAFMDVNGEIEINMLDEKLIKFLALQRVHQLFPSRVQASPG
NVGTHPLASGGHHPEVQRKEVQARAVFCPLLGLGGAVNMCYRTLYIGTGADMDVCLTNYGHCNYVSGKHA
CIFYDENTKHYELLNYSEHGTTVDNVLYSCDFSEKTPPTPPSSIVAKVQSVIRRRRHQKQDEEPSEEAAM
MSSQAQGPQRRPCNCKASSSSLIGGSGAGWEGTALLHHGSYIKLGCLQFVFSITEFATKQPKGDASLLQD
GVLAEKLSLKPHQGPVLRSNSVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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