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Report for CCDS29696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29696.1 Public Mus musculus 19 Aldh1a7 23 108 98 CCDS HistoryNCBI Gene:26358Re-query CCDS DB by CCDS ID:29696.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025656.3 ENSMUSP00000025656.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025656.3Link to Ensembl Protein Viewer:ENSMUSP00000025656.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025656Re-query CCDS DB by Protein ID:ENSMUSP00000025656
Original member NCBI NM_011921.2 NP_036051.1 Updated not alive Link to Nucleotide Sequence:NM_011921.2Link to Protein Sequence:NP_036051.1Re-query CCDS DB by Nucleotide ID:NM_011921Re-query CCDS DB by Protein ID:NP_036051
Current member NCBI NM_011921.3 NP_036051.1 Accepted alive Link to Nucleotide Sequence:NM_011921.3Link to Protein Sequence:NP_036051.1Re-query CCDS DB by Nucleotide ID:NM_011921Re-query CCDS DB by Protein ID:NP_036051Link to BLAST:NP_036051.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036051.1 501 O35945 501 100% 0 0

Chromosomal Locations for CCDS 29696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 20693463 20693535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20696336 20696410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20699898 20700055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20702211 20702375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20708150 20708334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20709398 20709500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20714681 20714794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20715921 20716049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20717696 20717757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20719186 20719315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20722278 20722418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20726958 20727062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 20727447 20727512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGTCTTCACCTGCACAACCTGCAGTCCCTGCCCCGCTGGCCAACTTGAAGATTCAACATACCAAGATCT
TTATAAACAATGAATGGCATGATTCGGTGAGCAGCAAGAAATTTCCTGTCCTTAACCCTGCAACTGAGGA
GGTCATCTGCCACGTGGAAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGCCGCAAGACAGGCT
TTCCAGATTGGCTCCCCATGGCGCACCATGGATGCTTCAGAGAGGGGCCGCCTGCTGAACAAGCTGGCTG
ACTTAATGGAGAGAGATCGTCTGCTGCTGGCTACAATGGAATCGATGAATGCTGGGAAAGTCTTTGCTCA
TGCATACCTGTTGGATGTAGAGATCAGCATAAAAGCATTACAGTACTTCGCAGGCTGGGCTGACAAGATC
CATGGCCAAACAATACCCAGTGATGGAAACATATTCACTTATACAAGGCGTGAACCTATTGGGGTGTGTG
GCCAAATCATCCCTTGGAATGGTCCATTGATTATATTCACTTGGAAGTTAGGCCCTGCCCTTAGCTGTGG
GAACACTGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACAGCTCTTCACATGGCATCTTTAATAAAA
GAGGCAGGGTTTCCTCCTGGCGTGGTGAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGGAGCCATCT
CCTCCCACATGGACATCGACAAAGTGTCCTTCACAGGATCAACAGAGGTTGGCAAATTAATCAAGGAAGC
TGCAGGGAAAAGCAATCTGAAGAGAGTCACCCTGGAGCTGGGGGGAAAGAGCCCTTGCATTGTGTTTGCA
GATGCCGACTTGGACAGTGCTGTTGAGTTTGCACACCAAGGAGTGTTCTTCCACCAGGGTCAGATTTGTG
TTGCAGCGTCCAGGCTTTTTGTTGAGGAATCAATTTACGATGAGTTTGTGAGGAGGAGTGTGGAGCGGGC
TAAGAAATACATTCTAGGAAATCCTCTGAACTCCGGAATAAATCAAGGTCCTCAGATTGACAAGGAACAA
CACAATAAAATACTTGGTCTCATTGAGAGTGGGAAGAAAGAAGGAGCCAAGCTGGAGTGTGGTGGAGGTC
GCTGGGGGAACAAAGGCTTCTTTGTCCAACCCACAGTCTTCTCCAATGTGACTGATGAGATGCGCATTGC
CAAAGAGGAGATATTTGGACCAGTGCAACAAATCATGAAGTTTAAATCTATGGATGATGTGATCAAGAGA
GCAAACAACACTACCTATGGTTTAGCAGCAGGAGTCTTCACTAAAGACCTGGATAAGGCCATCACTGTGT
CATCTGCTCTGCAGGCTGGGATGGTGTGGGTGAACTGCTATTTGGCTGTCCCTGTCCAATGCCCATTTGG
TGGATTCAAGATGTCTGGAAATGGGCGAGAACTGGGCGAACATGGTCTTTATGAATACACTGAGCTCAAG
ACAGTTGCAATGCAAATATCTCAGAAGAACTCATAA

Translation (501 aa):
MSSPAQPAVPAPLANLKIQHTKIFINNEWHDSVSSKKFPVLNPATEEVICHVEEGDKADVDKAVKAARQA
FQIGSPWRTMDASERGRLLNKLADLMERDRLLLATMESMNAGKVFAHAYLLDVEISIKALQYFAGWADKI
HGQTIPSDGNIFTYTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPLTALHMASLIK
EAGFPPGVVNIVPGYGPTAGGAISSHMDIDKVSFTGSTEVGKLIKEAAGKSNLKRVTLELGGKSPCIVFA
DADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFVRRSVERAKKYILGNPLNSGINQGPQIDKEQ
HNKILGLIESGKKEGAKLECGGGRWGNKGFFVQPTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKR
ANNTTYGLAAGVFTKDLDKAITVSSALQAGMVWVNCYLAVPVQCPFGGFKMSGNGRELGEHGLYEYTELK
TVAMQISQKNS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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