NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS26395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26395.1 Public Mus musculus 13 Prl6a1 23 108 98 CCDS HistoryNCBI Gene:19111Re-query CCDS DB by CCDS ID:26395.1Re-query CCDS DB by GeneID:19111See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091680.8 ENSMUSP00000089269.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091680.8Link to Ensembl Protein Viewer:ENSMUSP00000089269.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000091680Re-query CCDS DB by Protein ID:ENSMUSP00000089269
Original member Current member NCBI NM_011166.2 NP_035296.1 Accepted alive Link to Nucleotide Sequence:NM_011166.2Link to Protein Sequence:NP_035296.1Re-query CCDS DB by Nucleotide ID:NM_011166Re-query CCDS DB by Protein ID:NP_035296Link to BLAST:NP_035296.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035296.1 230 O35257 230 100% 0 0

Chromosomal Locations for CCDS 26395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27312665 27312692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27315279 27315457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27316255 27316368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27317973 27318152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27318924 27319115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (693 nt):
ATGCTGTCTTTGAGTCAACCTTGCTTCTCAGGGACTCTCCTGATGCTGTTGGCATCAAACTTCCTTCTGT
GGAAGAATGTGGCCCCTGTGCCCATGTATGCCAGTTTGGATGAATATGGTGAGATGTCCATATATGACCT
GCTTGATCACGTCACCATACTATCTCATAATGTCAGTGAGCTCACTGCAGAAATGCACAGGATATTTATG
GAGGATGTGCGATATAAACCAGGCAGGTGGTTCTCTGACAGATACCTTACTGCCTGCCACACATCTACAT
TGACTATTTCAGTGTCTAAGGAGGGAGCCCGACAGATGCCGGGTGTATTCCTTGTGAAAGAGATGATCAG
TATGTTGACAGCTTGGAGATATCCTCTGTATCACATAATAACTGAACTGAGTTATATGGAGCAAGCTCCA
GATGAGATCATATCAAGAGCCAGAAATATTGAAGAAAAAATCATAGTACTTATAGAAGCTCTTAGAGGGA
TACTCAGCAAGATTCAGCCTGGACCCCCAGAAAATGAGAGATATCCCGTGTGGAATGAACTGGCATCCTT
GCAGTCACCTGATGAAGACCTTCGCCATCTTACATTATTTAACTTATTCCAGTGCTTGGTCAAGGATTCA
CGTAAGATTGACTCTAGTATCAGGCTTTTGAAGTGCAAACTTCTCTATAACAGAGATTGTTAA

Translation (230 aa):
MLSLSQPCFSGTLLMLLASNFLLWKNVAPVPMYASLDEYGEMSIYDLLDHVTILSHNVSELTAEMHRIFM
EDVRYKPGRWFSDRYLTACHTSTLTISVSKEGARQMPGVFLVKEMISMLTAWRYPLYHIITELSYMEQAP
DEIISRARNIEEKIIVLIEALRGILSKIQPGPPENERYPVWNELASLQSPDEDLRHLTLFNLFQCLVKDS
RKIDSSIRLLKCKLLYNRDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH