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Report for CCDS49190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49190.1 Public Mus musculus 12 Zbtb42 23 108 98 CCDS HistoryNCBI Gene:382639Re-query CCDS DB by CCDS ID:49190.1Re-query CCDS DB by GeneID:382639See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169593.1 ENSMUSP00000133152.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169593.1Link to Ensembl Protein Viewer:ENSMUSP00000133152.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169593Re-query CCDS DB by Protein ID:ENSMUSP00000133152
Original member Current member NCBI NM_001100460.1 NP_001093930.1 Accepted alive Link to Nucleotide Sequence:NM_001100460.1Link to Protein Sequence:NP_001093930.1Re-query CCDS DB by Nucleotide ID:NM_001100460Re-query CCDS DB by Protein ID:NP_001093930Link to BLAST:NP_001093930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093930.1 420 Q811H0-1 420 100% 0 0

Chromosomal Locations for CCDS 49190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112679393 112680655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGAGTTCCCGGAGCACGGCGTACGGCTGCTGGGCCGCCTGAGGCAGCAGCGCGAGCTGGGGTTCCTGT
GCGACTGCACTGTTCTGGTGGGCGACGCGCGCTTCCCTGCGCACCGCGCTGTACTGGCCGCGTGCAGTGT
CTACTTCCATCTCTTCTACAGGGATCAGCCCGCGAGCAGCCGCGACACGGTGCGGCTCAACGGCGACATC
GTCACGGTACCCGCCTTCAGCCGCCTGCTGGACTTCATGTACGAGGGCCGCTTGGACCTGCACAACCTAC
CTGTCGAGGACGTCCTGGCTGCCGCCAGTTACCTGCACATGTATGACATCGTCAAGGTCTGCAAGGGCAG
ACTCAGAAAGAAGGACCCAGATCTGGAGACCCGTACGCTGGGGACAGAGCTTCCTGGGCAGCCACCACAC
CCCCTGCCTTCCTGGTCCCCTGCCTTCTGCCAAGCCGCACCAAAGGCCAAACACCCATCTCTAGGGGTCA
AGGCTACCCATCCCCTGCCAACATTTGGACCTCCGTCTTGGCAGGTTGCAGAGCAGTCAAGTGGGGCCCT
GGACCTGTCACTGAAGCCTAGCCCAAGACCGGAGCAGGTACACCCACCCTGTCGCCTCCAGACATCCCTC
TGCAGCTCCGTACAGCAAGTGGCGCAGCCTCTGGTGAAGGCTGAGCAAGATTCGTTCTCAGAACAAGATA
GCAGCAGCCCGCAGAGCGCGGACCGATCCCCACCACCAGTCTGTGCTTCTGCAGCCCAGGGCCTGGCAGT
GGACTTGGAGCCACTGCACATCGAAGGGACGGGCAGCCAGCAGCTTGGGCTGCCTGCAGAGCCAGTGCTC
GACAGTGAAGAGCTGGGTCCCAGCAGGCACCTTTGCATTTGCCCGCTATGCTGCAAGCTGTTCCCTAGCA
CCCACGCACTGCAGCTGCATCTCAGCGCCCACTTCCGGGAGCGGGACAGTGTCCGTGCCAGGCTCTCCCC
CGAGGGGTCCGTGCCCACGTGCCCACTCTGCAGCAAGACCTTCTCCTGCACATACACCCTGAAGAGGCAT
GAACGGACACACTCTGGGGAGAAGCCCTATACCTGCGTGCAGTGTGGCAAGAGCTTCCAGTACTCACACA
ACTTAAGCCGGCATGCTGTGGTCCACACGCGGGAGAAGCCCCATGCCTGCCGCTGGTGTGAGCGCAGATT
CACACAGTCCGGTGACCTGTACCGCCATGTCCGCAAGTTCCACTATGGCCTAGTCAAGCCCTTGCTTGTG
TGA

Translation (420 aa):
MEFPEHGVRLLGRLRQQRELGFLCDCTVLVGDARFPAHRAVLAACSVYFHLFYRDQPASSRDTVRLNGDI
VTVPAFSRLLDFMYEGRLDLHNLPVEDVLAAASYLHMYDIVKVCKGRLRKKDPDLETRTLGTELPGQPPH
PLPSWSPAFCQAAPKAKHPSLGVKATHPLPTFGPPSWQVAEQSSGALDLSLKPSPRPEQVHPPCRLQTSL
CSSVQQVAQPLVKAEQDSFSEQDSSSPQSADRSPPPVCASAAQGLAVDLEPLHIEGTGSQQLGLPAEPVL
DSEELGPSRHLCICPLCCKLFPSTHALQLHLSAHFRERDSVRARLSPEGSVPTCPLCSKTFSCTYTLKRH
ERTHSGEKPYTCVQCGKSFQYSHNLSRHAVVHTREKPHACRWCERRFTQSGDLYRHVRKFHYGLVKPLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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