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Report for CCDS50335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50335.1 Public Mus musculus 18 Nfatc1 23 108 98 CCDS HistoryNCBI Gene:18018Re-query CCDS DB by CCDS ID:50335.1Re-query CCDS DB by GeneID:18018See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167977.7 ENSMUSP00000126884.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167977.7Link to Ensembl Protein Viewer:ENSMUSP00000126884.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167977Re-query CCDS DB by Protein ID:ENSMUSP00000126884
Original member Current member NCBI NM_001164112.1 NP_001157584.1 Accepted alive Link to Nucleotide Sequence:NM_001164112.1Link to Protein Sequence:NP_001157584.1Re-query CCDS DB by Nucleotide ID:NM_001164112Re-query CCDS DB by Protein ID:NP_001157584Link to BLAST:NP_001157584.1

Chromosomal Locations for CCDS 50335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80607976 80608025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80635402 80636076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80649832 80649964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80653506 80653561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80663295 80663435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80665282 80665454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80666958 80667160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80682159 80682318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80697555 80698656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80708034 80708118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGACGGGGCTGGAGCAGGACCCGGAGTTCGACTTCGATTTCCTCTTCGAGTTCGATCAGAGCGGCGGGG
GCGCCGCGGCCGCAGAACACTACAGTTATGTGTCCCCTAGTGTCACCTCGACCCTGCCCCTTCCCACAGC
ACACTCTGCCTTGCCAGCAGCATGCCACGACCTCCAGACGTCCACCCCGGGTATCTCAGCTGTTCCTTCA
GCCAATCATCCCCCCAGTTACGGAGGGGCTGTGGACAGCGGGCCTTCGGGATACTTCCTGTCCTCTGGCA
ACACCAGACCCAACGGGGCCCCGACTCTGGAGAGTCCGAGAATCGAGATCACCTCCTACCTGGGCCTACA
CCATGGCAGCGGCCAGTTTTTCCACGACGTGGAGGTGGAAGACGTACTTCCTAGCTGCAAGCGCTCACCG
TCTACAGCAACCCTGCACCTGCCCAGCCTGGAAGCCTACAGAGACCCCTCCTGCCTGAGCCCAGCCAGCA
GTCTCTCCTCCAGAAGCTGTAACTCTGAGGCCTCCTCCTACGAGTCCAACTACTCCTACCCATACGCGTC
CCCCCAGACCTCTCCGTGGCAGTCACCCTGCGTGTCTCCCAAGACCACGGACCCGGAGGAGGGTTTTCCC
CGAAGCCTGGGTGCCTGCCACCTGCTAGGATCGCCCAGGCACTCCCCATCCACCTCTCCTCGGGCAAGCA
TCACGGAGGAGAGCTGGCTCGGTGCCCGCGGCTCCCGGCCCACGTCCCCCTGCAACAAGCGCAAGTACAG
TCTCAATGGCCGGCAGCCCTCCTGCTCACCCCACCACTCACCCACACCATCCCCCCATGGCTCCCCTCGG
GTCAGTGTGACCGAAGATACCTGGCTCGGTAACACCACCCAGTATACCAGCTCTGCCATTGTGGCAGCCA
TCAACGCCCTGACCACCGATAGCACTCTGGACCTGGGTGATGGGGTCCCTATCAAGTCTCGAAAGACAGC
ACTGGAGCATGCGCCCTCTGTGGCCCTCAAAGTAGAGCCAGCTGGGGAAGACCTGGGCACCACTCCACCC
ACTTCTGACTTCCCACCCGAGGAGTACACCTTCCAGCACCTTCGGAAGGGTGCCTTTTGCGAGCAGTATC
TGTCGGTGCCACAGGCCTCGTATCAGTGGGCGAAGCCCAAGTCTCTTTCCCCGACATCATATATGAGCCC
ATCCTTGCCTGCCCTTGACTGGCAGCTCCCGTCACATTCTGGTCCATACGAGCTTCGGATCGAGGTGCAG
CCCAAGTCTCACCACAGGGCTCACTATGAGACGGAAGGCAGCCGGGGGGCTGTGAAGGCTTCAGCTGGAG
GACACCCCATTGTGCAGCTACACGGTTACTTGGAGAATGAACCTCTCACGCTACAGCTGTTCATTGGGAC
GGCTGACGACCGCCTGCTGAGGCCCCACGCCTTCTACCAGGTCCACCGGATCACGGGGAAGACTGTCTCC
ACCACCAGCCACGAGATCATCCTGTCCAACACCAAAGTCCTGGAGATCCCGTTGCTTCCAGAAAATAACA
TGCGAGCCATCATCGACTGTGCTGGGATCCTGAAGCTCAGAAACTCTGATATTGAGCTGAGGAAAGGGGA
GACAGACATCGGGAGGAAGAACACCAGGGTGAGGCTGGTCTTCCGAGTTCACATCCCACAGCCCAATGGC
CGGACGCTGTCTCTCCAGGTGGCCTCGAACCCTATCGAGTGTTCCCAGCGGTCAGCCCAGGAGCTGCCCC
TCGTGGAGAAGCAGAGCACAGACAGCTACCCAGTCATCGGCGGGAAGAAGATGGTGCTGTCTGGCCATAA
CTTTCTGCAAGACTCCAAAGTCATTTTCGTGGAGAAGGCTCCAGATGGCCACCACGTCTGGGAGATGGAA
GCAAAGACTGACCGGGACCTGTGCAAGCCAAATTCCCTGGTGGTTGAGATACCACCTTTCCGCAACCAGA
GGATAACCAGCCCCGTCCAAGTCAGTTTCTATGTCTGCAACGGGAAACGGAAGAGAAGCCAGTACCAGCG
TTTCACGTACCTTCCTGCCAATGTTCCAATTATAAAGACAGAACCCACGGACGACTTTGAGCCAGCTCTG
ACCTGTGGACCAATGAGCCAGGGGATTAGTCCTCTGCCGAGGCCTTACTACAGCCAACAGCTCACCATGC
CTCCCGACCCCGGCTCCTGCCTCGTGGCTGGCTTCGCCCCCTGCTCCCAGAGGAACACGCTGATGCCCAC
GCCTCCCAACGCAAGCCCGAAGCTCCACGACCTTTCCTCTCCTGCCTACACCAAGGGCCTCACCAACCCG
GGCCACAGTGGTCACCTTGGACTTCAGCCACCCGCTTCGGAGGCCCCCACCATGCAGGAAGTGCCGAGAC
CCATGGCCATCCAACCCAACTCGCCTGAGCAGCCCCCATCCGCCAGGCTACAGCCGCAGGTGAGTCCACA
TCTGAACAGTAGCTGTCCCCTTGGTCGCCGACAAGTGCTCTGTCCCAACAGCCCCTCTTCTCCACTTCCA
TCTGCTGCCCAAGAGCCAGCCTGCTTACAGTCCTCAGCCCTCCCTCCTGACATGGGCCACCGGCAGCCAC
AACCGCAGAAGGTTCAAAGAAATGAATCTCCAGCCGTATTGCCAGAGGTGTGTGAGGACAGTGGCCATAA
CTTGGCCCCTATTCCTGTAGTGATCAAGCAAGAGCCTGAGGAATTGGACCAGTTGTACTTGGATGATGTA
AATGAGATCATACGTAACGACCTCTCCAGCACGATCCCCCACTCCTAA

Translation (925 aa):
MTGLEQDPEFDFDFLFEFDQSGGGAAAAEHYSYVSPSVTSTLPLPTAHSALPAACHDLQTSTPGISAVPS
ANHPPSYGGAVDSGPSGYFLSSGNTRPNGAPTLESPRIEITSYLGLHHGSGQFFHDVEVEDVLPSCKRSP
STATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSPCVSPKTTDPEEGFP
RSLGACHLLGSPRHSPSTSPRASITEESWLGARGSRPTSPCNKRKYSLNGRQPSCSPHHSPTPSPHGSPR
VSVTEDTWLGNTTQYTSSAIVAAINALTTDSTLDLGDGVPIKSRKTALEHAPSVALKVEPAGEDLGTTPP
TSDFPPEEYTFQHLRKGAFCEQYLSVPQASYQWAKPKSLSPTSYMSPSLPALDWQLPSHSGPYELRIEVQ
PKSHHRAHYETEGSRGAVKASAGGHPIVQLHGYLENEPLTLQLFIGTADDRLLRPHAFYQVHRITGKTVS
TTSHEIILSNTKVLEIPLLPENNMRAIIDCAGILKLRNSDIELRKGETDIGRKNTRVRLVFRVHIPQPNG
RTLSLQVASNPIECSQRSAQELPLVEKQSTDSYPVIGGKKMVLSGHNFLQDSKVIFVEKAPDGHHVWEME
AKTDRDLCKPNSLVVEIPPFRNQRITSPVQVSFYVCNGKRKRSQYQRFTYLPANVPIIKTEPTDDFEPAL
TCGPMSQGISPLPRPYYSQQLTMPPDPGSCLVAGFAPCSQRNTLMPTPPNASPKLHDLSSPAYTKGLTNP
GHSGHLGLQPPASEAPTMQEVPRPMAIQPNSPEQPPSARLQPQVSPHLNSSCPLGRRQVLCPNSPSSPLP
SAAQEPACLQSSALPPDMGHRQPQPQKVQRNESPAVLPEVCEDSGHNLAPIPVVIKQEPEELDQLYLDDV
NEIIRNDLSSTIPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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