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Report for CCDS50336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50336.1 Public Mus musculus 18 Nfatc1 23 108 98 CCDS HistoryNCBI Gene:18018Re-query CCDS DB by CCDS ID:50336.1Re-query CCDS DB by GeneID:18018See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170905.8 ENSMUSP00000129001.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170905.8Link to Ensembl Protein Viewer:ENSMUSP00000129001.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170905Re-query CCDS DB by Protein ID:ENSMUSP00000129001
Original member Current member NCBI NM_001164110.1 NP_001157582.1 Accepted alive Link to Nucleotide Sequence:NM_001164110.1Link to Protein Sequence:NP_001157582.1Re-query CCDS DB by Nucleotide ID:NM_001164110Re-query CCDS DB by Protein ID:NP_001157582Link to BLAST:NP_001157582.1

Chromosomal Locations for CCDS 50336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80607976 80608025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80635402 80636076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80649832 80649964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80653506 80653561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80663295 80663435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80665282 80665454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80666958 80667160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80682159 80682318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80697555 80698656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80712640 80712766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2820 nt):
ATGCCAAGTACCAGCTTTCCAGTCCCTTCCAAGTTTCCACTCGGCCCTCCGGCCGCAGTCTGCGGGAGCG
GAGAAACTTTGCGGCCCGCGCCGCCCTCCGGCGGCACCATGAAGGCGGCCGAGGAAGAACACTACAGTTA
TGTGTCCCCTAGTGTCACCTCGACCCTGCCCCTTCCCACAGCACACTCTGCCTTGCCAGCAGCATGCCAC
GACCTCCAGACGTCCACCCCGGGTATCTCAGCTGTTCCTTCAGCCAATCATCCCCCCAGTTACGGAGGGG
CTGTGGACAGCGGGCCTTCGGGATACTTCCTGTCCTCTGGCAACACCAGACCCAACGGGGCCCCGACTCT
GGAGAGTCCGAGAATCGAGATCACCTCCTACCTGGGCCTACACCATGGCAGCGGCCAGTTTTTCCACGAC
GTGGAGGTGGAAGACGTACTTCCTAGCTGCAAGCGCTCACCGTCTACAGCAACCCTGCACCTGCCCAGCC
TGGAAGCCTACAGAGACCCCTCCTGCCTGAGCCCAGCCAGCAGTCTCTCCTCCAGAAGCTGTAACTCTGA
GGCCTCCTCCTACGAGTCCAACTACTCCTACCCATACGCGTCCCCCCAGACCTCTCCGTGGCAGTCACCC
TGCGTGTCTCCCAAGACCACGGACCCGGAGGAGGGTTTTCCCCGAAGCCTGGGTGCCTGCCACCTGCTAG
GATCGCCCAGGCACTCCCCATCCACCTCTCCTCGGGCAAGCATCACGGAGGAGAGCTGGCTCGGTGCCCG
CGGCTCCCGGCCCACGTCCCCCTGCAACAAGCGCAAGTACAGTCTCAATGGCCGGCAGCCCTCCTGCTCA
CCCCACCACTCACCCACACCATCCCCCCATGGCTCCCCTCGGGTCAGTGTGACCGAAGATACCTGGCTCG
GTAACACCACCCAGTATACCAGCTCTGCCATTGTGGCAGCCATCAACGCCCTGACCACCGATAGCACTCT
GGACCTGGGTGATGGGGTCCCTATCAAGTCTCGAAAGACAGCACTGGAGCATGCGCCCTCTGTGGCCCTC
AAAGTAGAGCCAGCTGGGGAAGACCTGGGCACCACTCCACCCACTTCTGACTTCCCACCCGAGGAGTACA
CCTTCCAGCACCTTCGGAAGGGTGCCTTTTGCGAGCAGTATCTGTCGGTGCCACAGGCCTCGTATCAGTG
GGCGAAGCCCAAGTCTCTTTCCCCGACATCATATATGAGCCCATCCTTGCCTGCCCTTGACTGGCAGCTC
CCGTCACATTCTGGTCCATACGAGCTTCGGATCGAGGTGCAGCCCAAGTCTCACCACAGGGCTCACTATG
AGACGGAAGGCAGCCGGGGGGCTGTGAAGGCTTCAGCTGGAGGACACCCCATTGTGCAGCTACACGGTTA
CTTGGAGAATGAACCTCTCACGCTACAGCTGTTCATTGGGACGGCTGACGACCGCCTGCTGAGGCCCCAC
GCCTTCTACCAGGTCCACCGGATCACGGGGAAGACTGTCTCCACCACCAGCCACGAGATCATCCTGTCCA
ACACCAAAGTCCTGGAGATCCCGTTGCTTCCAGAAAATAACATGCGAGCCATCATCGACTGTGCTGGGAT
CCTGAAGCTCAGAAACTCTGATATTGAGCTGAGGAAAGGGGAGACAGACATCGGGAGGAAGAACACCAGG
GTGAGGCTGGTCTTCCGAGTTCACATCCCACAGCCCAATGGCCGGACGCTGTCTCTCCAGGTGGCCTCGA
ACCCTATCGAGTGTTCCCAGCGGTCAGCCCAGGAGCTGCCCCTCGTGGAGAAGCAGAGCACAGACAGCTA
CCCAGTCATCGGCGGGAAGAAGATGGTGCTGTCTGGCCATAACTTTCTGCAAGACTCCAAAGTCATTTTC
GTGGAGAAGGCTCCAGATGGCCACCACGTCTGGGAGATGGAAGCAAAGACTGACCGGGACCTGTGCAAGC
CAAATTCCCTGGTGGTTGAGATACCACCTTTCCGCAACCAGAGGATAACCAGCCCCGTCCAAGTCAGTTT
CTATGTCTGCAACGGGAAACGGAAGAGAAGCCAGTACCAGCGTTTCACGTACCTTCCTGCCAATGTTCCA
ATTATAAAGACAGAACCCACGGACGACTTTGAGCCAGCTCTGACCTGTGGACCAATGAGCCAGGGGATTA
GTCCTCTGCCGAGGCCTTACTACAGCCAACAGCTCACCATGCCTCCCGACCCCGGCTCCTGCCTCGTGGC
TGGCTTCGCCCCCTGCTCCCAGAGGAACACGCTGATGCCCACGCCTCCCAACGCAAGCCCGAAGCTCCAC
GACCTTTCCTCTCCTGCCTACACCAAGGGCCTCACCAACCCGGGCCACAGTGGTCACCTTGGACTTCAGC
CACCCGCTTCGGAGGCCCCCACCATGCAGGAAGTGCCGAGACCCATGGCCATCCAACCCAACTCGCCTGA
GCAGCCCCCATCCGCCAGGCTACAGCCGCAGGTGAGTCCACATCTGAACAGTAGCTGTCCCCTTGGTCGC
CGACAAGTGCTCTGTCCCAACAGCCCCTCTTCTCCACTTCCATCTGCTGCCCAAGAGCCAGCCTGCTTAC
AGTCCTCAGCCCTCCCTCCTGACATGGGCCACCGGCAGCCACAACCGCAGAAGGTTCAAAGAAATGAATC
TCCAGCCGTATTGCCAGAGGTGTGTGAGGACAGTGGCCATAACTTGGCCCCTATTCCTGTAGTGATCAAG
CAAGAGCCTGAGGAATTGGACCAGTTGTACTTGGATGATGTAAATGAGATCATACGTAACGACCTCTCCA
GCACGATCCCCCACTCCTAA

Translation (939 aa):
MPSTSFPVPSKFPLGPPAAVCGSGETLRPAPPSGGTMKAAEEEHYSYVSPSVTSTLPLPTAHSALPAACH
DLQTSTPGISAVPSANHPPSYGGAVDSGPSGYFLSSGNTRPNGAPTLESPRIEITSYLGLHHGSGQFFHD
VEVEDVLPSCKRSPSTATLHLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPWQSP
CVSPKTTDPEEGFPRSLGACHLLGSPRHSPSTSPRASITEESWLGARGSRPTSPCNKRKYSLNGRQPSCS
PHHSPTPSPHGSPRVSVTEDTWLGNTTQYTSSAIVAAINALTTDSTLDLGDGVPIKSRKTALEHAPSVAL
KVEPAGEDLGTTPPTSDFPPEEYTFQHLRKGAFCEQYLSVPQASYQWAKPKSLSPTSYMSPSLPALDWQL
PSHSGPYELRIEVQPKSHHRAHYETEGSRGAVKASAGGHPIVQLHGYLENEPLTLQLFIGTADDRLLRPH
AFYQVHRITGKTVSTTSHEIILSNTKVLEIPLLPENNMRAIIDCAGILKLRNSDIELRKGETDIGRKNTR
VRLVFRVHIPQPNGRTLSLQVASNPIECSQRSAQELPLVEKQSTDSYPVIGGKKMVLSGHNFLQDSKVIF
VEKAPDGHHVWEMEAKTDRDLCKPNSLVVEIPPFRNQRITSPVQVSFYVCNGKRKRSQYQRFTYLPANVP
IIKTEPTDDFEPALTCGPMSQGISPLPRPYYSQQLTMPPDPGSCLVAGFAPCSQRNTLMPTPPNASPKLH
DLSSPAYTKGLTNPGHSGHLGLQPPASEAPTMQEVPRPMAIQPNSPEQPPSARLQPQVSPHLNSSCPLGR
RQVLCPNSPSSPLPSAAQEPACLQSSALPPDMGHRQPQPQKVQRNESPAVLPEVCEDSGHNLAPIPVVIK
QEPEELDQLYLDDVNEIIRNDLSSTIPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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