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Report for CCDS50162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50162.1 Public Mus musculus 17 Fbxl17 23 108 98 CCDS HistoryNCBI Gene:50758Re-query CCDS DB by CCDS ID:50162.1Re-query CCDS DB by GeneID:50758See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024761.12 ENSMUSP00000024761.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024761.12Link to Ensembl Protein Viewer:ENSMUSP00000024761.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000024761Re-query CCDS DB by Protein ID:ENSMUSP00000024761
Original member Current member NCBI NM_015794.1 NP_056609.1 Accepted alive Link to Nucleotide Sequence:NM_015794.1Link to Protein Sequence:NP_056609.1Re-query CCDS DB by Nucleotide ID:NM_015794Re-query CCDS DB by Protein ID:NP_056609Link to BLAST:NP_056609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056609.1 701 Q9QZN1-1 701 100% 0 0

Chromosomal Locations for CCDS 50162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63060271 63060411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63080421 63080563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63225025 63225101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63356748 63356878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63384945 63385052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63471408 63471539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63487712 63487969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63490765 63490887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63499025 63500017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGGGCCACCTTCTCTCGAAGGAGCCGCGTAACCGCCCGAGCCAGAAGAGGCCTCGCTGCTGCAGCTGGT
GTCGCCGCCGGCGCCCTCTCCTCAGACTGCCCCGCCGGGCTCTGGCCAAGGCGTCCCCGCAGCCCGCGGC
GCCCCGGAGCCGGGACTGCTTCTTCCGCGGGCCCTGCATGCTCTGCTTCATCGTGCACAGCCCCGGCGCG
CCCGCCTCCGCCGGCCTAGAGGAGGAGCCGCCGCTCTCGCCACCGCCGCCGCCGCCGCGGGACGGGGCCT
ACGCCGCCGTCTCCTCGCAGCACTTGGCGCGGCGCTACGCGGCCCTGGCCGCCGAGGACTGCGCCGCCGC
CGCACGCCGCTTCCTGCTGTCCTCGGCCGCCGCCGCCGCCGCCGCTGCCTCGTCGCCCGCGTCCTGCTGC
AAGGAGCTGGGGCTGGCCGCCGCCGCCGCCTGGGAGCAGCAGGGCCGGAGCCTCTTCCTGGCCGGCGTGG
GGCCCGTGCGCTTCCTGGGACCGCTGGCCGCCGTGCAGCTCTTCCGGGCACCGCCGGCGCCGCCGCCGCA
GGCCGAGCCCGCCACGGCCCTCGAGATGGTTTGCAAGCGGAAAGGGGCCGGGGTCCCCGCCTGCACCCCC
TGCAAGCAGCCCCGTTGCGGCTGCGGGGGCTGCGGCGGGGGCGGCGGCGGCGGGGGAGGGCCCGCGGGAG
GAGGTGCCTCGCCGCCGCGGCCGCCCGATGCCGGCTGCTGCCAGGCCCCGGAGCAGCCCCCGCCGCCGCT
CTGCCCCGCGCCCGCCTCTCCCGCCTCAGAGTGTGCCCCCATCGTGGCCGCCGCCGGGGACACAGTCCGA
GCCGGGGGCACCGCCCCCTCGTCTGCCCAGCAGCAGCCCGAGAGCGGCGACGCGGACTGTCAGGAGCCCC
CCGAAAACCCCTGCGACTGTCACAGGGAGCCGCCCCCCGAGATCCCAGACATCAACCAACTGCCGCCGTC
CATCCTGCTTAAGATATTTTCCAATTTGTCCCTGAACGAACGCTGCCTTTCTGCATCGTTGGTTTGCAAG
TACTGGCGTGACCTTTGCTTAGATTTCCAGTTTTGGAAGCAGCTGGACCTTAGTAGTCGTCAGCAGGTTA
CTGATGAATTATTGGAAAAAATTGCCTCCAGAAGTCAGAATATAATTGAGATTAACATTTCTGATTGTCG
AAGTCTGTCTGACAGTGGCGTGTGTGTCCTAGCATTTAAGTGTCCTGGACTTCTTAGGTATACAGCCTAC
AGGTGTAAGCAGCTTTCTGACACCTCAATCATTGCGGTCGCGTCTCACTGCCCTTTACTGCAGAAAGTCC
ACGTAGGCAACCAGGACAAGCTCACCGATGAAGGACTTAAGCAGCTGGGCTCAAGATGCAGAGAACTCAA
AGACATCCATTTTGGCCAGTGTTACAAGATCTCAGATGAAGGCATGATTGTCATAGCTAAGAGCTGCCTG
AAGTTACAGAGGATATACATGCAGGAAAACAAATTAGTGACAGATCAGTCAGTGAAGGCATTTGCTGAGC
ACTGTCCTGAACTCCAGTATGTTGGCTTCATGGGTTGTTCAGTTACTTCCAAAGGAGTCATTCACTTAAC
CAAGCTAAGGAACCTGTCCAGCTTAGACCTCCGTCACATCACTGAACTGGATAATGAAACCGTGATGGAA
ATCGTCAAGAGGTGCAAAAATCTCAGCTCTCTGAATCTCTGTCTGAACTGGATCATAAACGACAGGTGTG
TGGAGGTCATTGCAAAGGAAGGACAGAACCTGAAAGAGCTGTACCTGGTGTCCTGTAAGATCACTGATTA
TGCACTGATAGCCATTGGGCGATACAGCGTGACCATAGAGACTGTGGACGTCGGATGGTGTAAAGAAATC
ACAGATCAAGGAGCCACCCTGATTGCACAGAGCAGCAAGTCCCTGAGATACTTGGGCCTGATGAGATGTG
ACAAAGTCAATGAATTGACAGTGGAGCAGCTGGTGCAGCAGTACCCGCACATCACCTTCAGCACCGTTCT
GCAGGACTGCAAGAGGACCTTGGAGAGAGCCTACCAGATGGGCTGGACCCCCAATATGTCCGCTGCCACC
TCCTAA

Translation (701 aa):
MGHLLSKEPRNRPSQKRPRCCSWCRRRRPLLRLPRRALAKASPQPAAPRSRDCFFRGPCMLCFIVHSPGA
PASAGLEEEPPLSPPPPPPRDGAYAAVSSQHLARRYAALAAEDCAAAARRFLLSSAAAAAAAASSPASCC
KELGLAAAAAWEQQGRSLFLAGVGPVRFLGPLAAVQLFRAPPAPPPQAEPATALEMVCKRKGAGVPACTP
CKQPRCGCGGCGGGGGGGGGPAGGGASPPRPPDAGCCQAPEQPPPPLCPAPASPASECAPIVAAAGDTVR
AGGTAPSSAQQQPESGDADCQEPPENPCDCHREPPPEIPDINQLPPSILLKIFSNLSLNERCLSASLVCK
YWRDLCLDFQFWKQLDLSSRQQVTDELLEKIASRSQNIIEINISDCRSLSDSGVCVLAFKCPGLLRYTAY
RCKQLSDTSIIAVASHCPLLQKVHVGNQDKLTDEGLKQLGSRCRELKDIHFGQCYKISDEGMIVIAKSCL
KLQRIYMQENKLVTDQSVKAFAEHCPELQYVGFMGCSVTSKGVIHLTKLRNLSSLDLRHITELDNETVME
IVKRCKNLSSLNLCLNWIINDRCVEVIAKEGQNLKELYLVSCKITDYALIAIGRYSVTIETVDVGWCKEI
TDQGATLIAQSSKSLRYLGLMRCDKVNELTVEQLVQQYPHITFSTVLQDCKRTLERAYQMGWTPNMSAAT
S


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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