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Report for CCDS19594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19594.1 Public Mus musculus 5 Rplp0 23 108 98 CCDS HistoryNCBI Gene:11837Re-query CCDS DB by CCDS ID:19594.1Re-query CCDS DB by GeneID:11837See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086519.11 ENSMUSP00000083705.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086519.11Link to Ensembl Protein Viewer:ENSMUSP00000083705.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086519Re-query CCDS DB by Protein ID:ENSMUSP00000083705
Original member Current member NCBI NM_007475.5 NP_031501.1 Accepted alive Link to Nucleotide Sequence:NM_007475.5Link to Protein Sequence:NP_031501.1Re-query CCDS DB by Nucleotide ID:NM_007475Re-query CCDS DB by Protein ID:NP_031501Link to BLAST:NP_031501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031501.1 317 P14869 317 100% 0 0

Chromosomal Locations for CCDS 19594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115559835 115559888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115560741 115561004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115561099 115561245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115561333 115561518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115562426 115562566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115563283 115563444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGCCCAGGGAAGACAGGGCGACCTGGAAGTCCAACTACTTCCTCAAGATCATCCAACTTTTGGATGATT
ATCCAAAATGCTTCATTGTGGGAGCAGACAACGTGGGCTCCAAGCAGATGCAGCAGATCCGCATGTCGCT
CCGAGGGAAGGCCGTGGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCTATCAGGGGCCACCTGGAG
AACAACCCAGCTCTGGAGAAACTGCTGCCTCACATCCGGGGGAACGTGGGCTTCGTGTTCACCAAGGAGG
ACCTCACTGAGATTCGGGATATGCTGTTGGCCAATAAGGTGCCAGCTGCTGCTCGGGCTGGTGCCATCGC
CCCGTGTGAGGTCACTGTGCCAGCTCAGAACACTGGTCTAGGACCCGAGAAGACCTCCTTCTTCCAGGCT
TTGGGCATCACCACGAAAATCTCCAGAGGCACCATTGAAATTCTGAGTGATGTGCAGCTGATAAAGACTG
GAGACAAGGTGGGAGCCAGCGAGGCCACACTGCTGAACATGCTGAACATCTCCCCCTTCTCCTTCGGGCT
GATCATCCAGCAGGTGTTTGACAACGGCAGCATTTATAACCCTGAAGTGCTCGACATCACAGAGCAGGCC
CTGCACTCTCGCTTTCTGGAGGGTGTCCGCAACGTGGCCAGTGTGTGTCTGCAGATCGGGTACCCAACTG
TTGCCTCGGTGCCACACTCCATCATCAATGGGTACAAGCGCGTCCTGGCATTGTCTGTGGAGACTGAGTA
CACCTTCCCACTTACTGAAAAGGTCAAGGCCTTCCTGGCTGATCCATCTGCATTTGCGGCTGCTGCCCCT
GCAGCTGCTGCCACCACTGCTGCCCCTGCGGCTGCTGCAGCCCCTGCCAAAGCTGAAGCAAAGGAAGAGT
CGGAGGAATCAGATGAGGATATGGGATTCGGTCTCTTCGACTAA

Translation (317 aa):
MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE
NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQA
LGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQA
LHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAP
AAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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