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Report for CCDS16972.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16972.1 Public Mus musculus 2 Dsn1 23 108 98 CCDS HistoryNCBI Gene:66934Re-query CCDS DB by CCDS ID:16972.1Re-query CCDS DB by GeneID:66934See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16972.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103129.8 ENSMUSP00000099418.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103129.8Link to Ensembl Protein Viewer:ENSMUSP00000099418.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000103129Re-query CCDS DB by Protein ID:ENSMUSP00000099418
Original member Current member EBI ENSMUST00000103130.7 ENSMUSP00000099419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103130.7Link to Ensembl Protein Viewer:ENSMUSP00000099419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103130Re-query CCDS DB by Protein ID:ENSMUSP00000099419
Original member Current member NCBI NM_025853.3 NP_080129.2 Accepted alive Link to Nucleotide Sequence:NM_025853.3Link to Protein Sequence:NP_080129.2Re-query CCDS DB by Nucleotide ID:NM_025853Re-query CCDS DB by Protein ID:NP_080129Link to BLAST:NP_080129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080129.2 348 Q9CYC5 348 100% 0 0

Chromosomal Locations for CCDS 16972.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156996196 156996281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156996733 156996820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156997607 156997754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156998720 156998797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156999136 156999195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157000834 157000924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157001683 157001755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157002689 157002762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157005168 157005491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157005848 157005872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGACGTCAGTGACCAGATCAGAAGACCAGGAACCCACGATGTCCGAGACTCAGGATCGTCCATTGCAGC
CAAGTCTCAAGCCTTTGGAAGCATTGCCTCAATCCTCTGCCTACCAGGAAATGATGACGCAAGGCGTTTC
AGAGGAAAAAAACCACCTTGGCTCGAACCCTGGAGAGGGGGAAAGTTGTGGTGCCGACCACCAGGAGGGA
TCTCAGTTGAGGTCCTTTCATTTGTCCCCTCAAGAACAGTCTATCCGTCCTCAAGACAGAAGGCAGTCCT
GGAGACGAGCAAGCATGAAAGAAGTAAACCGGCGGAAGTCATTGGCTCCCTTCCACCCAGGCATCACAGA
GCTCTGCAGGTCCATCAGTGTGAAGTTAGCCCAGAGCCAACGGCTGGGCGCCCTCCTGCTCTCCAGCTTC
CAGTTCTCTGTTGAAAAACTTGAACCTTTCTTAAAGAACACTAAGGACTTCAGCCTTGAATGTTTTAGAG
CGAAAGCATCTTCTCTCTCTGAAGAATTGAAACATTTTACAGACAGGCTGGGAAATGATGGAACACTGCA
AAAATGTTTTGTTGAAGATTCAAAAGAAAAAGCAGCAGATTTTTCACTGGAAGCATCAGTAGCTGAGGTG
AAAGAATATATAACAAAGTTTTCTTTAGAGCGTCAGGCCTGGGATCGGCTCTTACTGCAGTACCAGAACG
AGGTTCCACCTGAAGAGATGCCCAGAGGATCAACTGAAACCAGAATCACTGAAGTCAAGGTGGATCCTGC
AGCCTACCTCAGGTCTTCCCAGAAGGAAGTTCTTAGCACGAAGCCAGACTACCAGAGAATAGTACAAGAT
CAGAACCAAGTCTTTGCCTACGTGGAGTTAGTGATGGATGAGCTCCAAGGATCAGTGAAGCAGCTGCAAG
CCCTCATGGATGAGAGTACTCAGTACCTCCAGAAGGTGTCAGTACAGCTCAAGAAGAGAAGTATGGACCA
ATTAGACTCTTCACCTGCTCGGAAACTGCTCAAGCTCCCCCTCCAGAGCTCACCTTCCACGCAGTGA

Translation (348 aa):
MTSVTRSEDQEPTMSETQDRPLQPSLKPLEALPQSSAYQEMMTQGVSEEKNHLGSNPGEGESCGADHQEG
SQLRSFHLSPQEQSIRPQDRRQSWRRASMKEVNRRKSLAPFHPGITELCRSISVKLAQSQRLGALLLSSF
QFSVEKLEPFLKNTKDFSLECFRAKASSLSEELKHFTDRLGNDGTLQKCFVEDSKEKAADFSLEASVAEV
KEYITKFSLERQAWDRLLLQYQNEVPPEEMPRGSTETRITEVKVDPAAYLRSSQKEVLSTKPDYQRIVQD
QNQVFAYVELVMDELQGSVKQLQALMDESTQYLQKVSVQLKKRSMDQLDSSPARKLLKLPLQSSPSTQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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