NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49054.1 Public Mus musculus 12 Etv1 23 108 98 CCDS HistoryNCBI Gene:14009Re-query CCDS DB by CCDS ID:49054.1Re-query CCDS DB by GeneID:14009See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159334.7 ENSMUSP00000125676.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159334.7Link to Ensembl Protein Viewer:ENSMUSP00000125676.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159334Re-query CCDS DB by Protein ID:ENSMUSP00000125676
Original member Current member NCBI NM_001163154.1 NP_001156626.1 Accepted alive Link to Nucleotide Sequence:NM_001163154.1Link to Protein Sequence:NP_001156626.1Re-query CCDS DB by Nucleotide ID:NM_001163154Re-query CCDS DB by Protein ID:NP_001156626Link to BLAST:NP_001156626.1

Chromosomal Locations for CCDS 49054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 38783742 38783802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38793171 38793224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38827778 38827907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38831081 38831269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38835069 38835316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38852220 38852288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38854160 38854228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38856941 38857110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38861287 38861388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 38865548 38865769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGCTTCAAGATTTAAGTGCAGGCGTCTTCTTCCCTCCTTGTTCACAACACAGAACATTAGCTCAGGTAC
CTGACAATGATGAGCAGTTTGTTCCAGACTATCAGGCTGAAAGTTTGGCTTTTCATGGCCTCCCACTGAA
AATCAAGAAAGAACCCCACAGCCCATGTTCAGAACTCGGGTCTGCTTGCAGTCAAGAGCAGCCCTTTAAA
TTCAGCTATGGAGAAAAGTGCCTGTACAATGTCAGTGCCTATGATCAGAAGCCACAAGTGGGAATGAGGC
CCTCCAATCCCCCGACACCATCCAGCACTCCAGTGTCCCCACTACACCATGCATCTCCAAACACAGCTCA
TACTCCGAAACCTGACCGGGCCTTCCCAGCTCACCTCCCTCCTTCTCAGTCCATACCAGACAGCACCTAC
CCCATGGACCACAGATTTCGCCGCCAGCTTTCTGAACCCTGTAATTCTTTTCCTCCTTTGCCGACAATGC
CAAGGGAAGGGCGTCCTATGTACCAACGCCAGATGTCTGAGCCAAACATCCCCTTCCCACCACAAGGCTT
TAAGCAGGAGTACCACGACCCAGTCTATGAACATACCACCATGGTTGGCGGTGCAGCCAGCCAAAGCTTC
CCCCCTCCTTTGATGATCAAACAGGAACCCAGAGATTTTGCATATGACTCAGAAGTGCCTAGCTGCCACT
CCATTTATATGAGGCAAGAAGGCTTCCTGGCTCATCCAAGCAGAACAGAAGGCTGCATGTTTGAGAAGGG
TCCCAGGCAGTTCTATGATGACACCTGTGTGGTCCCGGAGAAGTTCGATGGGGACATTAAGCAAGAGCCT
GGAATGTACCGGGAAGGACCCACGTACCAGAGGCGAGGATCCCTCCAGCTCTGGCAGTTTTTGGTAGCTC
TTCTGGATGACCCTTCAAATTCTCATTTCATTGCCTGGACTGGACGAGGCATGGAATTTAAACTGATTGA
GCCCGAAGAGGTGGCCCGGCGTTGGGGCATTCAGAAGAACAGGCCGGCGATGAACTATGACAAACTTAGT
CGTTCTCTCCGCTATTATTATGAGAAGGGAATCATGCAAAAGGTGGCTGGAGAAAGATACGTGTACAAAT
TTGTGTGTGACCCGGAAGCCCTTTTCTCTATGGCCTTTCCGGATAACCAGCGCCCACTGCTGAAGACGGA
CATGGAACGTCACATCAACGAAGAGGACACAGTGCCTCTGTCTCACTTTGATGAGAGCATGACCTACATG
CCCGAAGGGGGCTGCTGCAACCCTCACCCCTACAACGAAGGATACGTGTACTAA

Translation (437 aa):
MLQDLSAGVFFPPCSQHRTLAQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSELGSACSQEQPFK
FSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNTAHTPKPDRAFPAHLPPSQSIPDSTY
PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHTTMVGGAASQSF
PPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEP
GMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLS
RSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMTYM
PEGGCCNPHPYNEGYVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH