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Report for CCDS50689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50689.1 Public Mus musculus 2 Myef2 23 108 98 CCDS HistoryNCBI Gene:17876Re-query CCDS DB by CCDS ID:50689.1Re-query CCDS DB by GeneID:17876See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50689.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000147105.7 ENSMUSP00000114817.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000147105.7Link to Ensembl Protein Viewer:ENSMUSP00000114817.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000147105Re-query CCDS DB by Protein ID:ENSMUSP00000114817
Original member NCBI NM_001162418.1 NP_001155890.1 Updated not alive Link to Nucleotide Sequence:NM_001162418.1Link to Protein Sequence:NP_001155890.1Re-query CCDS DB by Nucleotide ID:NM_001162418Re-query CCDS DB by Protein ID:NP_001155890
Current member NCBI NM_001162418.2 NP_001155890.1 Accepted alive Link to Nucleotide Sequence:NM_001162418.2Link to Protein Sequence:NP_001155890.1Re-query CCDS DB by Nucleotide ID:NM_001162418Re-query CCDS DB by Protein ID:NP_001155890Link to BLAST:NP_001155890.1

Chromosomal Locations for CCDS 50689.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125088874 125089037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125095708 125095759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125095912 125096120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125097977 125098075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125098450 125098518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125100319 125100420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125108956 125109019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125109154 125109203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125109670 125109823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125110480 125110671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125113849 125113942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125114043 125114050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125115438 125115490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125116665 125116873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125123385 125123518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGCCGATGCCGACAAGTCCGAGGCGGCCGCGGGTGACGACGGCTCGCAGCAGCAACCGGCTGAGCCGC
GGCGAGACACGCACCCCGGCGAGCCCGAGAAACCGCCGCGCAGCAGCGCCAACGGCGTTAAAATGGAGAA
TGATGAGTCAGTGAAGGAAGAAAAATCTGATTTAAAAGAAAAGTCTACAGGAAATAAGAAGGCCAATCGG
TTCCATCCTTATTCAAAAGATAAGAATTCGGGCACTGGAGAAAAGAAAGGTCCAAATCGGAACAGAGTGT
TCATTAGCAACATACCCTATGACATGAAGTGGCAGGCTATTAAAGATTTGATGAGAGAAAAAGTTGGTGA
GGTTACATACGTGGAGCTCTTTAAGGATGCGGAAGGAAAATCAAGGGGTTGTGGCGTGGTTGAATTCAAA
GATGAAGAATTTGTAAAGAAAGCATTAGAAACTATGAACAAATATGACCTTAGTGGAAGGCCTTTGAATA
TTAAAGAGGATCCGGATGGAGAAAATGCTCGCCGGGCACTGCAGCGAACAGGAACATCATTTCAAGGATC
ACATGCCTCCGATGTGGGATCTGGGTTGGTGAATTTACCACCTTCCATTCTCAATAATCCAAACATTCCT
CCTGAGGTTATCAGCAATTTGCAGGCTGGTAGACTTGGTTCCACAATTTTTGTTGCTAATCTTGACTTCA
AAGTTGGTTGGAAGAAATTAAAGGAAGTGTTCAGCATAGCTGGAACTGTGAAGCGAGCTGATATTAAAGA
AGACAAGGATGGCAAGAGCAGAGGCATGGGCACTGTCACTTTTGAGCAGGCAATTGAAGCAGTCCAAGCA
ATTTCCATGTTCAATGGGCAGTTTTTATTTGATAGACCTATGCATGTGAAAATGGATGACAAATCTGTCC
CTCATGAAGACTACCGTTCACATGATAGTAAGACATCACAGTTACCACGTGGTCTTGGAGGCATTGGAAT
GGGACTTGGTCCAGGTGGACAGCCTATTAGTGCCAGCCAGCTGAACATAACTGGTGTAATGGGAAATTTG
GGTCCAAGTGGAGTTGGGTTTGGTGGTCTGGAAGCAATGAATAGCATGGCAGGCTTTGGTGGAGTTGGCC
GAATGGGAGAGCTATACCGTGGTGCAATGACTAGTAGCATGGAGCGAGATTTCGGACGTGGTGATATTGG
ATTAAGTCGAGGCTTTGGCGATTCCTTTGGTAGACTTGGCGGCAGCATGAGCGGCATGAGCACTGTGACT
GGAGGCATGGGCATGGGACTGGACCGCATGAGCTCCAGCTTCGACAGGATGGGGCCAGGCATTGGAGCCA
TACTGGAAAGGAGCATCGATGTAGACCGAGGGTTTTTATCAGGTCCCATGGGAAGCGGAATGAGAGACAG
ATTAGGCTCCAAAGGCAACCAGATATTTGTTAGAAATCTTCCTTTTGACTTGACTTGGCAGAAATTAAAA
GAGAAATTCAGCCAATGTGGTCATGTAATGTTTGCAGAGATAAAGATGGAGAATGGCAAGTCAAAAGGCT
GTGGGACAGTCAGGTTTGAATCTGCAGAGTCAGCGGAAAAGGCCTGCAGGATCATGAATGGCATCAAGAT
CAGCGGCAGGGAAATCGATGTGCGCTTGGACCGCAATGCGTAA

Translation (550 aa):
MADADKSEAAAGDDGSQQQPAEPRRDTHPGEPEKPPRSSANGVKMENDESVKEEKSDLKEKSTGNKKANR
FHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFK
DEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIP
PEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQA
ISMFNGQFLFDRPMHVKMDDKSVPHEDYRSHDSKTSQLPRGLGGIGMGLGPGGQPISASQLNITGVMGNL
GPSGVGFGGLEAMNSMAGFGGVGRMGELYRGAMTSSMERDFGRGDIGLSRGFGDSFGRLGGSMSGMSTVT
GGMGMGLDRMSSSFDRMGPGIGAILERSIDVDRGFLSGPMGSGMRDRLGSKGNQIFVRNLPFDLTWQKLK
EKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIMNGIKISGREIDVRLDRNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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