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Report for CCDS50861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50861.1 Public Mus musculus 3 Zbtb10 23 108 98 CCDS HistoryNCBI Gene:229055Re-query CCDS DB by CCDS ID:50861.1Re-query CCDS DB by GeneID:229055See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155203.1 ENSMUSP00000119386.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155203.1Link to Ensembl Protein Viewer:ENSMUSP00000119386.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155203Re-query CCDS DB by Protein ID:ENSMUSP00000119386
Original member Current member NCBI NM_177660.3 NP_808328.2 Accepted alive Link to Nucleotide Sequence:NM_177660.3Link to Protein Sequence:NP_808328.2Re-query CCDS DB by Nucleotide ID:NM_177660Re-query CCDS DB by Protein ID:NP_808328Link to BLAST:NP_808328.2

Chromosomal Locations for CCDS 50861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9251130 9252080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9264535 9265420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9278254 9278352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9279956 9280132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9280291 9280463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9280734 9281033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2586 nt):
ATGTCGTTCAGTGAGATGAACCGCAGGACGCTGGCGTTCCGAGGAGGCGGGTTGGTCACCGGCGGCGGCG
GCCCCACGAACAATAACGCTGGCGGGGAGGCCTCTTCTTGGCCTCCGCAGCCGCAACCGCGACTGCCCGC
GCCGCCCGCGCCGCAGCAGCCGAATGGGCGCGGGGCCGACGAGGAAATGGAATTGGAGGGCCTGGAGCCC
CAGGACTCGGAGGCCGCCGCCGGCGCGGCCGCCGCCGAGGACGTCAAGGAGTTGCTGCTGCTCCCTCAGG
ACACGGGCGGCCCCTCCTTGCTGGGCGGCGGCGCGGGGGGCCCCCTGCTAGCGGAAAGGAACCGTCGGAC
TCTGGCCTTCCGCGGGGGAGGCGGCGGGGGTCTCGGCAACAATGGCAGCAGCCGCGGCCGCCCGGAGACC
TCGGCGTGGCCCCTCAGGCATTTCAATGGGCGAGGGCCGGCGGCCGTGGATCCGGAGCTGGACGCGCTGG
AGGGGAAGGAGTGGATGCAGGACGGGGCGTCCCTGAGCTACAGCACCGAGGAGGAGGGGGCGAGCCCGGG
CGATGGCAGTGGGGCGGAAGGCGGCAGCTGCAGCAGCAGCAGGCGGTCGGGCGGCGATGGTGGGGACGAA
GCGGAGGGCAGCGGTGTGGGAGCTGGCGAAGGAGAGACTGTCCAGCACTTCCCGCTCGCGAGGCCCAAGT
CCCTCTTGCAGAAGCTCCAGTGCTCCTTCCAGACCTCTTGGCTCAAGGACTTCCCTTGGCTGCGGTACTC
CAAGGATACCGGCCTTATGTTCTGCGGATGGTGCCAAAAGATCCCCGAGGATGGGGGCGGCGTGGACCTT
ACCCAGGTGGGGCATGATGAGCTTTCGCGAGGGACCCGCAACTACAAGAAAACCCTGCTCCTAAGGCACC
ACGTCTCCACCGAACACAAACTCCACGAAGCCAACGCCCAGGAGTCAGAAATACCATCAGAGGAGGGGTA
CTGTGACTTTAATAGCAGGCCAAATGAGAACTCTTATTGCTATCAACTTCTTCGACAACTAGATGAACAG
AGAAAGAAAGATATTCTTTGTGATGTCAGCATTGTGGTGAGCGGGAAAATCTTTAAAGCTCATAAGAACA
TCCTGGTTGCAGGCAGCCGTTTCTTTAAGACTTTATATTGTGTTTCAAACAAAGAAAGCCCTAACCAAAA
CAATACTACCCACTTAGATATTGCTGCAGTTCAAGGTTTTTCAGTCATCTTGGACTTCCTGTATTCTGGG
AACCTGGTGCTCACAAGCCAAAACGCCATTGAAGTGATGACAGTGGCTAGCTACCTTCAAATGAGTGAAG
TCGTTCAAACTTGCAGGAATTTCATTAAAGATGCCTTAAATATCAGCATTAAATCGGAAGCTCCGGAGTC
TGTGGTTGTGGACTATAACAATAGGAAGCCAGTTAGCAGGGACAGCCTGCCTTCATCCTCACGGGAACAG
AAGATCGCCAGCTTCTGGGCAACGCGGAACCTGACCAACTTGGCAAGTAATATAAAAACTGAAAACGAAG
GCTGTGATGTCGACGAGGGCCAAGTAGAAAACTACCAGATGAATGACAGTAACTGGATCCGGGATGGCTC
TCCTGAATTGGCTGAAAATGAATCTCAAGGTAAAACAAAAGTGTTTATTTGGAATAATATGACCTCTCAA
GAGACTGGCAAAGCAAGGAGGAAAAACCAAACTACAAAGAGATTTGTTTATAATATACCGCCTAACAGTG
AGACAAAGGTAGAAGATTGCTCAGTGATGCAGCCCCCTGCTGCCTACCCAGAAGAAAGCAAGGCCTTACT
CATCAAGGAAGAGCCAGATTTGGATGGTGCACTACTCTCAGGGCCTGATGGTGATAGGACCATGAACACA
AATTTATTGGCTGAAGCCTGCAGTGGTCAAGATGCTGGGGATGCTGGAGCATCACATGATTTCAAGTATG
GTTTGATGCCTGGCACTTCAAGTGATTTCAAGTATGGGTTGCTACCAAGTACTTCAAATGACTTCAAATT
CGGATTGCTACCGGGTGCTTCAAATGATTTCAAGTATGGATTATTGCCAGAATCTTGGCCCACACAAGAA
ACGTGGGAAAATGGTGACTCATCTCTAATCATGAACAAGTTGAAATGCCCTCATTGTAGCTATGTAGCCA
AATACAGGCGAACACTAAAAAGGCACTTGCTCATTCATTCTGGAGTAAGATCATTTAAGTGTGAAATTTG
TGGAAAGATGTTTACTAGAAGAGAACACGTAAAAAGACATTCCCTGGTACATAAAAAGGATAAAAAATAC
AAATGCATGGTGTGTAAGAAGATCTTCATGTTAGCAGCCAGTGTTGGAATAAAACATGGTTCTCGACGCT
ACGGAGTATGCATGGACTGTGTAGATAAGTCACAGCCAGGAGGACAAGAAGTTGTAAATCAGGGACAAGA
TACAGAGTTCCCTCGGGATGAAGAGTACGAGGAAAACGAAGGTGGCGAGCCCGATGAGGAGCTGGCTGAA
GACGGACAAGATGAAAACGATGCACCTCGATGGGATGAGTCAGGAGGCGTTTATGTCTCTGGATGA

Translation (861 aa):
MSFSEMNRRTLAFRGGGLVTGGGGPTNNNAGGEASSWPPQPQPRLPAPPAPQQPNGRGADEEMELEGLEP
QDSEAAAGAAAAEDVKELLLLPQDTGGPSLLGGGAGGPLLAERNRRTLAFRGGGGGGLGNNGSSRGRPET
SAWPLRHFNGRGPAAVDPELDALEGKEWMQDGASLSYSTEEEGASPGDGSGAEGGSCSSSRRSGGDGGDE
AEGSGVGAGEGETVQHFPLARPKSLLQKLQCSFQTSWLKDFPWLRYSKDTGLMFCGWCQKIPEDGGGVDL
TQVGHDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQESEIPSEEGYCDFNSRPNENSYCYQLLRQLDEQ
RKKDILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCVSNKESPNQNNTTHLDIAAVQGFSVILDFLYSG
NLVLTSQNAIEVMTVASYLQMSEVVQTCRNFIKDALNISIKSEAPESVVVDYNNRKPVSRDSLPSSSREQ
KIASFWATRNLTNLASNIKTENEGCDVDEGQVENYQMNDSNWIRDGSPELAENESQGKTKVFIWNNMTSQ
ETGKARRKNQTTKRFVYNIPPNSETKVEDCSVMQPPAAYPEESKALLIKEEPDLDGALLSGPDGDRTMNT
NLLAEACSGQDAGDAGASHDFKYGLMPGTSSDFKYGLLPSTSNDFKFGLLPGASNDFKYGLLPESWPTQE
TWENGDSSLIMNKLKCPHCSYVAKYRRTLKRHLLIHSGVRSFKCEICGKMFTRREHVKRHSLVHKKDKKY
KCMVCKKIFMLAASVGIKHGSRRYGVCMDCVDKSQPGGQEVVNQGQDTEFPRDEEYEENEGGEPDEELAE
DGQDENDAPRWDESGGVYVSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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