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Report for CCDS29482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29482.1 Public Mus musculus 19 Slc25a45 23 108 98 CCDS HistoryNCBI Gene:107375Re-query CCDS DB by CCDS ID:29482.1Re-query CCDS DB by GeneID:107375See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025732.13 ENSMUSP00000025732.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025732.13Link to Ensembl Protein Viewer:ENSMUSP00000025732.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025732Re-query CCDS DB by Protein ID:ENSMUSP00000025732
Original member Current member EBI ENSMUST00000155697.7 ENSMUSP00000121596.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155697.7Link to Ensembl Protein Viewer:ENSMUSP00000121596.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155697Re-query CCDS DB by Protein ID:ENSMUSP00000121596
Original member Current member NCBI NM_001361973.1 NP_001348902.1 Accepted alive Link to Nucleotide Sequence:NM_001361973.1Link to Protein Sequence:NP_001348902.1Re-query CCDS DB by Nucleotide ID:NM_001361973Re-query CCDS DB by Protein ID:NP_001348902Link to BLAST:NP_001348902.1
Original member Current member NCBI NM_134154.4 NP_598915.1 Accepted alive Link to Nucleotide Sequence:NM_134154.4Link to Protein Sequence:NP_598915.1Re-query CCDS DB by Nucleotide ID:NM_134154Re-query CCDS DB by Protein ID:NP_598915Link to BLAST:NP_598915.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348902.1 288 Q8CFJ7-1 288 100% 0 0
NP_598915.1 288 Q8CFJ7-1 288 100% 0 0

Chromosomal Locations for CCDS 29482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5878655 5878691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5879849 5879892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5880085 5880156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5880440 5880625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5884345 5884603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5884723 5884991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGCCCGTGGAAGAGTTTGTGGCTGGCTGGATCTCTGGAGCTGTGGGCCTGGTCCTGGGGCACCCATTCG
ACACTGTAAAGGTGCGGTTACAGACCCAAAGCACGTACCAGGGCATTGTGGACTGCGTAGTCAAGACTTA
CCGCCATGAGTCAGTCCTGGGTTTCTTCAAGGGAATGAGTTTCCCCATCGCCAGTGTAGCCCTGGTCAAC
TCCGTCCTGTTCGGAGTGTACAGCAACACGCTCCTGGCGCTAACAGCCACCTCCCATCAGGAGCGACGGG
CCCAGCCACCCAGCTACACAAACATCTTTATAGCAGGTTGTACTGGGGGCCTCCTGCAGGCCTACTGCCT
GGCTCCTTTTGACCTCATCAAAGTCCGTCTACAAAACCAGACAGAGCCAAGGATGCAGATATCGAGTTCT
ATGCCCCGGTACCGGGGGCCTGTGCACTGTGCAGCCTCCATCTTGAGAGAAGAAGGACCCCAGGGACTGT
TCAGAGGATCCTGGGCCCTGGTGTTGAGAGACACTCCTACGTTAGGAATGTACTTTGTCACCTATGAAGG
GCTATGTCGCCAGTACACACCAGAAGGCCAGAATCCCAGTTCAGCCACAGTTCTGGTGGCAGGGGGCTTT
GCAGGCATAGCCTCCTGGATCACAGCCACTCCTTTTGATGTGATCAAGTCCCGGATGCAGATGGATGGGC
TGAAGGGAAGAAAGTATGGAGGGATGCTGGACTGCATGGCAAGCAGCTTCCGGCAGGAGGGAATAGGGGT
CTTTTTCAAGGGCATGACACTCAACAGCGCCCGTGCCTTTCCGGTCAATGCTGCCACCTTCCTTAGCTAT
GAATACCTGCTACGCCTGTGGAGATGA

Translation (288 aa):
MPVEEFVAGWISGAVGLVLGHPFDTVKVRLQTQSTYQGIVDCVVKTYRHESVLGFFKGMSFPIASVALVN
SVLFGVYSNTLLALTATSHQERRAQPPSYTNIFIAGCTGGLLQAYCLAPFDLIKVRLQNQTEPRMQISSS
MPRYRGPVHCAASILREEGPQGLFRGSWALVLRDTPTLGMYFVTYEGLCRQYTPEGQNPSSATVLVAGGF
AGIASWITATPFDVIKSRMQMDGLKGRKYGGMLDCMASSFRQEGIGVFFKGMTLNSARAFPVNAATFLSY
EYLLRLWR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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