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Report for CCDS40231.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40231.1 Public Mus musculus 8 Tmco3 23 108 98 CCDS HistoryNCBI Gene:234076Re-query CCDS DB by CCDS ID:40231.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40231.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045229.6 ENSMUSP00000040347.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045229.6Link to Ensembl Protein Viewer:ENSMUSP00000040347.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000045229Re-query CCDS DB by Protein ID:ENSMUSP00000040347
Original member Current member NCBI NM_172282.2 NP_758486.1 Accepted alive Link to Nucleotide Sequence:NM_172282.2Link to Protein Sequence:NP_758486.1Re-query CCDS DB by Nucleotide ID:NM_172282Re-query CCDS DB by Protein ID:NP_758486Link to BLAST:NP_758486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758486.1 678 Q8BH01-1 678 100% 0 0

Chromosomal Locations for CCDS 40231.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 13291728 13292171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13292710 13292889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13294846 13295037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13295980 13296108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13298213 13298305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13303728 13303914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13308346 13308466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13310145 13310340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13313806 13313956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13318843 13318922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13319763 13319912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 13320761 13320874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGAAGGTACTGGACCAGAGTCTCCTCTGGATGCTGCTTCCCTTCTTTCACCTGATAGCCAGTGCTGCCG
AGCACGAGGAGGTGGCCAAGCATGCCATCAAGCTGCACCGCGGGAAGGGCGCCACTGCCACTCAGAGGAA
ACAGTGGGCCCTGGACAGCTGCAGGAGGCTCACCGGGCTCCTGAGGCAGAAGAATGTGGTCCTCAACAAA
CTGAAGAATGCCATCAGAGCCGTGGAGAAGGACACCAGCCTTTCGGGCGAGGAGAAGCTCTTCCAGGTGC
ACACATTCGAGATTTTCCAGAAAGAGCTGAATGAAAGTGAAAATTCGATCTTCCAGGCCATCTACGGACT
GCAAAGAGCCCTGCAGGGCGACTACAGAGACGTGGTCAACATGAAAGAGAGCAGCAAGCAGCGGCTGGAG
GCTCTGAGGGAGGCTGCCATTAAGGAGGAGACAGAGTATGTGGAACTTCTTGCCGCAGAAAAACACCAAG
TGGAAGCCCTGAAAAACATGCAACATCAAAACAAGAGTCTCTCCATGCTTGACGAGATCCTCGAAGATGT
GAGGAAAGCCGCCGACCGTCTGGAGGAGGAGATCGAGGAGCACGCCTTCGACGACAATAAATCAGTCAAA
GGCGTCAACTTTGAGGCAGTTCTGAGAGTGGAGGAGGAGGAGGCCAGCTCCAAGCAGAATATGACGAAGC
GGGAGGTGGAGGACGGCCTGGGTCTCAGCATGCTCATCGACTCCCAGAACAACCAGTACATTCTGACCAA
GCCCAGAGATTCTACTATCCCACGCGCAGACCACCACTTCATAAAGGACATCGTGACCATAGGGATGCTG
TCCTTACCATGTGGCTGGCTGTGTACAGCAATAGGTCTGCCTACGATGTTTGGGTATATAATTTGTGGCG
TGCTTCTGGGGCCTTCAGGACTGAACAGTATTAAGTCTATTGTACAGGTGGAAACATTAGGAGAATTTGG
GGTCTTCTTTACTCTGTTTCTGGTTGGCTTAGAATTTTCTCCAGAGAAGCTAAGAAAGGTGTGGAGGATA
TCCTTACAAGGACCCTGCTATATGACGCTGCTGATGATTGCCTTTGGCTTATGGTGGGGACACCTCCTGC
GGATCAGACCCACTCAGAGTGTCTTCATTTCCACCTGTCTGTCCTTGTCGAGCACACCCCTGGTATCCAG
GTTCCTAGTGGGAAGTGCCCGAGGTGATAAAGAAGCAGGTGACATCGACTACAGCACAGTGCTGCTTGGC
ATGCTGGTGATGCAAGACGTGCAGCTGGGGCTGTTCATTGCCGTCATGCCAACTCTCATACAGGCCGGAG
CGGGCGCCTCTTCCAGCGTTGTCATGGAAGTATTGCGCATACTGTTTCTGATTGGACAAATTCTCTTTTC
GCTAGCTGCTGTCTTTCTTTTGTGTCTTGTCATGAAGACGTATCTCATAGGACCGTATTATCGAAAGCTG
CACCTGGAGAGCAAGGGGAACAAAGAGATCCTCGTCCTGGGAGTGTCAGCCTTCACCTTCCTGATGCTGA
CGGTCACAGAGCTGCTGGACGTCTCCATGGAGCTTGGATGCTTCCTGGCTGGAGCGCTGGTCTCTTCCCA
AGGGCACATGGTCACCGAGGAGATCATGACTTACATCGAGCCTATCCGTGACTTCCTGGCCATCATCTTC
TTCGCATCCATAGGGCTCCATGTGTTCCCCACCTTTGTGATCTATGAGTTGACGGTGCTGGTGTTCCTCA
CCCTGTCCGTGGTCATCATGAAGTTTGTGTTGGCAGTGCTGGTCTTGTCTCTCATCCTGCCGAGGAGCAG
CCAGTACATCAAGTGGATCGTATCCGCTGGGCTGGCACAGGTCAGCGAGTTCTCCTTTGTCCTGGGGAGT
CGAGCACGGAGAGCAGGCATCCTCTCCAGAGAGGTGTACCTCCTTATCCTAAGTGTGACCACACTCAGCC
TCTTACTCGCCCCAGTGCTGTGGAAAGCAGCCATTACCAAGTGTGTGCCGAGACCAGAGAGGCGCTCAAG
TCTCTGA

Translation (678 aa):
MKVLDQSLLWMLLPFFHLIASAAEHEEVAKHAIKLHRGKGATATQRKQWALDSCRRLTGLLRQKNVVLNK
LKNAIRAVEKDTSLSGEEKLFQVHTFEIFQKELNESENSIFQAIYGLQRALQGDYRDVVNMKESSKQRLE
ALREAAIKEETEYVELLAAEKHQVEALKNMQHQNKSLSMLDEILEDVRKAADRLEEEIEEHAFDDNKSVK
GVNFEAVLRVEEEEASSKQNMTKREVEDGLGLSMLIDSQNNQYILTKPRDSTIPRADHHFIKDIVTIGML
SLPCGWLCTAIGLPTMFGYIICGVLLGPSGLNSIKSIVQVETLGEFGVFFTLFLVGLEFSPEKLRKVWRI
SLQGPCYMTLLMIAFGLWWGHLLRIRPTQSVFISTCLSLSSTPLVSRFLVGSARGDKEAGDIDYSTVLLG
MLVMQDVQLGLFIAVMPTLIQAGAGASSSVVMEVLRILFLIGQILFSLAAVFLLCLVMKTYLIGPYYRKL
HLESKGNKEILVLGVSAFTFLMLTVTELLDVSMELGCFLAGALVSSQGHMVTEEIMTYIEPIRDFLAIIF
FASIGLHVFPTFVIYELTVLVFLTLSVVIMKFVLAVLVLSLILPRSSQYIKWIVSAGLAQVSEFSFVLGS
RARRAGILSREVYLLILSVTTLSLLLAPVLWKAAITKCVPRPERRSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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