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Report for CCDS20971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20971.1 Public Mus musculus 7 Zfp574 23 108 98 CCDS HistoryNCBI Gene:232976Re-query CCDS DB by CCDS ID:20971.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053410.10 ENSMUSP00000057817.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053410.10Link to Ensembl Protein Viewer:ENSMUSP00000057817.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000053410Re-query CCDS DB by Protein ID:ENSMUSP00000057817
Original member Current member EBI ENSMUST00000179556.1 ENSMUSP00000136547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179556.1Link to Ensembl Protein Viewer:ENSMUSP00000136547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179556Re-query CCDS DB by Protein ID:ENSMUSP00000136547
Original member Current member NCBI NM_001168506.2 NP_001161978.1 Accepted alive Link to Nucleotide Sequence:NM_001168506.2Link to Protein Sequence:NP_001161978.1Re-query CCDS DB by Nucleotide ID:NM_001168506Re-query CCDS DB by Protein ID:NP_001161978Link to BLAST:NP_001161978.1
Original member Current member NCBI NM_175477.5 NP_780686.1 Accepted alive Link to Nucleotide Sequence:NM_175477.5Link to Protein Sequence:NP_780686.1Re-query CCDS DB by Nucleotide ID:NM_175477Re-query CCDS DB by Protein ID:NP_780686Link to BLAST:NP_780686.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161978.1 900 Q8BY46 900 100% 0 0
NP_780686.1 900 Q8BY46 900 100% 0 0

Chromosomal Locations for CCDS 20971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25079555 25082257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2703 nt):
ATGACTGAGGAGAGTGAAGAGACGGTCCTGTACATTGAGCACCGCTATGTCTGCTCTGAGTGCAACCAGC
TCTATGGATCCTTGGAGGAGGTGCTTGTGCACCAGAACTCCCACGTGCCCCAGCAGCACTTTGAGCTGGT
GGGCGTGGCTGACCCTGGAGTCACAGTGGCCACAGAGGCTGCTTCAGGCACAGGCCTATATCAGACCCTC
ATCCAAGAGAGCCAGTACCAGTGTCTTGAGTGTGGGCAACTGCTCCTGTCCCCCAGCCAGCTCCTGGAGC
ACCAGGAGCTACACCTGAAGATGATGGCACCGCAGGAGGCAGTGCCAGCCAAGCCACCACCCAAGGTGCC
CCCCTTGGGCTCCAGCGCCATCCACTATGAGTGTGTGGACTGTAAGGCTCTGTTCGCCAGCCAAGAGATG
TGGCTTAGCCATCGCCAGACGCATCTCAGAGCCACGCCCAACAAGGCTCCTGCTCCTGTCGTCTTGGGGT
CCCCAGTTGTTTTGGGCCCTCCTGTGGGCCAGGCTCGAGTGGCTGTGGAACATTCATACCGAAAAGCAGA
AGAGGGTGGGGAGGGGGCGGCCGTTCCGTCTGTGGCCGCCACCACCGAGATGGTGACAGAAGTGGAGCTG
CTCCTCTACAAGTGCTCCGAGTGCTCCCAGCTCTTCCAGATGCCCGCTGACTTCCTGGAGCACCAGGCCA
CCCACTTCCCTGCTCCTGTCCCGGAGGCTGCGGAGCCTGCCACACAGCAGGAAACCCAGGTCCCCTCACC
CACTGAGGCAGCAGTGTCTCAGCCCGAACCCCTGCCAGCCTCTGATCACAGTTATGAGCTGCGGAATGAG
CTGCGAAATGGGGAGGCCATTGGGCGAGACCGCAGGGGACGGAAGCCAAGGAGGAACAACAGTGGAGAGT
CAGGTGGGGCGGCCACCCAGGAACTATTTTGCTCTGCCTGTGACCAGCTCTTTCTCTCACCCCACCAGCT
ACAGCAGCACCTTCGGAGTCACCGGGAGGGTGTTTTTAAGTGTCCCCTGTGCAGTCGTGTCTTCCCTAGC
CCTTCTAGTCTGGACCAGCACCTTGGTGACCATAGCAGTGAGTCTCACTTCCTGTGTGTAGACTGTGGCC
TAGCCTTTGGCACCGAAGCCCTCCTCCTGGCCCACCGGCGAGCCCATACCCCGAATCCTCTGCATTCGTG
TCCCTGTGGGAAGACCTTTGTTAACCTCACCAAGTTCCTTTATCACCGGCGTACCCACGGAGCAGGAGGT
GTCCCTTTGCCCACAACACCAGTTCCACCAGAGGAGCCTGCTATTAGCTTTCCTGAGCCAGCCCCTGCAG
AGACCGGAGAGCTAGAGGCCCCAGAGCTCCCCGTATGTGAGGAGAGTTCAGCCGAGCCTGCAGCTCCAGG
CTCTTACCGCTGCCTCCTGTGTAGCCGGGAGTTTGGTAAGGCGTTGCAGCTGACCCGGCACCAGCGTTTT
GTGCACCGGCTAGAGCGGCGCCATAAGTGCAGCATTTGTGGCAAGATGTTCAAGAAGAAGTCTCATGTGC
GGAACCATCTGCGTACACACACTGGGGAGCGGCCCTTCCCCTGCCCTGACTGCTCTAAGCCTTTCAACTC
ACCAGCCAACCTGGCCCGCCACCGGCTCACACACACGGGGGAGCGGCCCTACCGGTGTGGGGACTGCGGC
AAGGCCTTCACGCAGAGCTCCACTCTGAGGCAGCATCGCCTGGTGCATGCCCAGCACTTCCCCTACCGCT
GCCAGGAGTGCGGAGTCCGTTTTCACCGCCCTTATCGCCTGCTCATGCACCGCTACCACCACACAGGCGA
GTACCCCTACAAGTGCCGTGAGTGCCCCCGTTCCTTCTTGCTACGCCGGCTGCTAGAGGTCCACCAGCTT
GTGATCCATGCTGGGCGCCAGCCCTACCGCTGCTCATCCTGTGGGGCCGCCTTCCCCTCGTCACTGCGGC
TCCGTGAGCATCGCTGCGCGGCCGCTGCTGCCCAGGCCCCACGGCGCTTTGAGTGTGGGACCTGTGGCAA
GAAAGTGGGCTCTGCTGCTCGCCTGCAGGCACATGAAGCCGCCCATGCTGCTGCGGGTCCTGGAGAGGTC
TTAGCCAAGGAGCCTCCTGCTCCCCGGGCCTCGAGAGCCACTCGCACACCAGTCGCCCCCTCCCCGACAG
CCCTCAGTGGTACAACCTCTGCTGCCCCTGCAGCCCCTGCCCGGCGTCGGGGTCCGGAGTGCAGTGAGTG
CAAGAAGCTCTTCAGCACAGAGACGTCACTACAGGTCCATCGGCGCATCCACACAGGTGAGCGGCCATAC
CCCTGTCCAGACTGTGGCAAGGCCTTCCGCCAGAGTACCCATCTGAAAGACCACAGACGCCTACACACAG
GCGAGCGGCCCTTTGCGTGTGAAGTGTGTGGCAAGGCCTTTGCCATCTCCATGCGTCTGGCAGAACATCG
CCGCATCCACACGGGTGAGCGACCCTACTCCTGTCCTGACTGTGGCAAGAGCTACCGTTCCTTCTCCAAT
CTCTGGAAGCACCGCAAGACCCACCAGCAGCAACACCAGGCGGCCGTCCGACAGCAGCTGGCAGAGGCGG
AGGCTGCTGTGGGCCTGGCTGTGATGGAAACTGCAGTGGAGGCTCTGCCCCTTGTGGAGGCCATTGAGAT
CTACCCTCTAGCTGAAGCTGATGGGGTCCAGATCAGTGGCTGA

Translation (900 aa):
MTEESEETVLYIEHRYVCSECNQLYGSLEEVLVHQNSHVPQQHFELVGVADPGVTVATEAASGTGLYQTL
IQESQYQCLECGQLLLSPSQLLEHQELHLKMMAPQEAVPAKPPPKVPPLGSSAIHYECVDCKALFASQEM
WLSHRQTHLRATPNKAPAPVVLGSPVVLGPPVGQARVAVEHSYRKAEEGGEGAAVPSVAATTEMVTEVEL
LLYKCSECSQLFQMPADFLEHQATHFPAPVPEAAEPATQQETQVPSPTEAAVSQPEPLPASDHSYELRNE
LRNGEAIGRDRRGRKPRRNNSGESGGAATQELFCSACDQLFLSPHQLQQHLRSHREGVFKCPLCSRVFPS
PSSLDQHLGDHSSESHFLCVDCGLAFGTEALLLAHRRAHTPNPLHSCPCGKTFVNLTKFLYHRRTHGAGG
VPLPTTPVPPEEPAISFPEPAPAETGELEAPELPVCEESSAEPAAPGSYRCLLCSREFGKALQLTRHQRF
VHRLERRHKCSICGKMFKKKSHVRNHLRTHTGERPFPCPDCSKPFNSPANLARHRLTHTGERPYRCGDCG
KAFTQSSTLRQHRLVHAQHFPYRCQECGVRFHRPYRLLMHRYHHTGEYPYKCRECPRSFLLRRLLEVHQL
VIHAGRQPYRCSSCGAAFPSSLRLREHRCAAAAAQAPRRFECGTCGKKVGSAARLQAHEAAHAAAGPGEV
LAKEPPAPRASRATRTPVAPSPTALSGTTSAAPAAPARRRGPECSECKKLFSTETSLQVHRRIHTGERPY
PCPDCGKAFRQSTHLKDHRRLHTGERPFACEVCGKAFAISMRLAEHRRIHTGERPYSCPDCGKSYRSFSN
LWKHRKTHQQQHQAAVRQQLAEAEAAVGLAVMETAVEALPLVEAIEIYPLAEADGVQISG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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