NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39720.1 Public Mus musculus 6 Caprin2 23 108 98 CCDS HistoryNCBI Gene:232560Re-query CCDS DB by CCDS ID:39720.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111569.8 ENSMUSP00000107195.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111569.8Link to Ensembl Protein Viewer:ENSMUSP00000107195.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111569Re-query CCDS DB by Protein ID:ENSMUSP00000107195
Original member NCBI NM_181541.4 NP_853519.2 Updated not alive Link to Nucleotide Sequence:NM_181541.4Link to Protein Sequence:NP_853519.2Re-query CCDS DB by Nucleotide ID:NM_181541Re-query CCDS DB by Protein ID:NP_853519
Current member NCBI NM_181541.5 NP_853519.2 Accepted alive Link to Nucleotide Sequence:NM_181541.5Link to Protein Sequence:NP_853519.2Re-query CCDS DB by Nucleotide ID:NM_181541Re-query CCDS DB by Protein ID:NP_853519Link to BLAST:NP_853519.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853519.2 1031 Q05A80-1 1031 100% 0 0

Chromosomal Locations for CCDS 39720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 148842830 148843398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148845172 148845235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148846153 148846253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148848106 148848291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148851275 148851443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148858601 148858741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148860487 148860588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148862404 148862468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148863503 148863572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148865830 148865952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148868989 148869645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148870613 148870656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148873008 148873163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148876453 148876535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148877742 148877980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148883448 148883534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148890609 148890671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 148894937 148895113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3096 nt):
ATGAAGTCAGCCAAGTCCCAAGTGAACCAGGATCAGCAAGGGGAAAACCAGCGGGCTCTGAGCCCCCTGC
AGTCTACTCTCAGTTCTGCTGCATCTCCTTCCCAGGCATATGAAACCTATATTGATAATGGACTTATATG
CCTTAAACACAAAATTAGGAACATCGAGAAGAAGAAGCTCAAACTGGAAGATTATAAAGATCGCCTTAAA
AATGGAGAGCAGCTTAACCCAGACCAGTTGGAAGCAGTAGAAAAGTATGAAGAAGTACTTCATAATTTGG
AATTTGCCAAGGAGCTTCAGAAAACTTTTTCTGCACTGAGCCAAGATCTGCTGAAAGCGCAGAAAAAGGC
CCAGAGAAGGGAGCATATGCTGAAACTTGAGACTGAGAAGAAAAAGCTTCGAACTATGCTTCAAATTCAG
TATGTATTACAGAATTTGACACAAGAACATGTACAAAAAGACTTCAAAGGGGGCTTGAATGGTGCAATGT
ATTTGCCTTCAAAAGAACTTGACTACCTCATTAAATTCTCAAAACTGACCTGCCCTGAAAGAAATGAAAG
TCTGAGTGTTGAAGACCAGATGGAGCAGTCATCCTTGTACTTTTGGGACCTTTTGGAAGGTAGTGAAAAA
ACAGTGGTAGGAACAACATATAAACATGTGAAAGACCTGCTGTCTAAATTGCTGCACTCAGGTTATTTTG
AAAGTGTCCCAGTTCTCAGGAATTCTAAGGAAAAAGCAGAAGAAGTGCTAATGCAATCAGAAATGAAAAA
ACAGTTACTGAAGAGTGAGTCTATCAAAGAGTCAGAATCTCTTACGGAACTTGTACAACCAGAGATACAG
CCACAAGAGTTTCTTAACAGACGCTATATGACAGAAGTAAAATTTTCAAGAAAACAAGAAAATGTAGAAC
AATCCTGGGAAGCAGATTATGCTAGGAAACCAAGTCTCCTCAAATGCTGGAATACACTTCCAGAGCCAGA
TGGTCAGGAGAAGAAGAAAGAGTCCTTGGAGTCCTGGAAGTCTTCTCTTAAGACTCAGGAGGTATCAAAG
CCTGTGGTTTCCTTAGTACAGGGGAAACTCAGGCCAACATTGCAGGAAGAGCAGAAGCAGCAGGTTCCTA
TAACACCTGTCAGTCAGTGGAAGCCAGAAAGCCCTAAGTCCAAAGTGGGCAGTCCTCAAGAAGAGCAGAA
TGTACAGGAGACACCAAAGCCATGGGTGGTTCAGTCACAGAAAGAACAAGATCCAAAGAAGCTGCCTCCT
GGATCCTGGGCAGTATCTGTGCAGAGTGAACAGAGTGGCAGCAGATCCTGGACCACCCCTGTGTGCAGAG
AACAGGCTTCAGTGCAGCCTGGGACTCCAGTATCCTGGGAAAACAATGCTGAGAACCAGAAACACTCCTT
AGTACCACAATCACAGATTTCTCTAAAGTCCTGGGGAGCAGCTTCAGCAGGCCTCTTACCAAATGGCCAA
GTCCTGACGAGGAAGTTAAATGTAGAACCCAAAGATGTGCCTAAGCCCCTGCCTCAGCCTATAGACTCTT
CTTCTGCCCTTCCAAAGGATCCAGTATTGAGGAAAGAAAAACTGCAGGACCTCATGAGCCAGATTCAAGG
AACTTATAACTTTATGCAAGAGTCTGTTCTAGATTTTGACAAACCCTCAAGTGCAATTCCATCATCACAG
CCGCCTTCAGCTTGTCCAGTCTCTACAGTATCTGCAGAACAAAACTTGTCCAACCAAAGTGATTTTCTTC
AAGAACCATCACAGGCCTCTTCTCCGGTTACTTGTAGCTCAAATGCTTGCTTGGTGACTACTGATCAGGC
TTCTTCGGGATCTGAAACAGAGTTTACGACCTCAGAGACCCCTGAGATGGTGGTCTCCCCCTGCAAGCCA
AAGCCAGCTTCTGCACTTGCTTCTCCAAATCCTCCCCTGTCAAAGAGCTTCCAGTTACCTCCTGCAAGTG
GGAGTTCAGAAGCCATTAGCACAGCACCTTTTCAGGCCATGCAGACAGTGTTTAATGTTAATGCACCTCT
GCCTCCACGGAAAGAACAAGAAATGAAAGAACCTCCTTATTCATCTGGCTACAATCAAAATTTTACTTCA
TCAAGTACACAGACAGTATCCCAATGCCAGCTCCCAGCTGTACACATAGACCAGACAACTCAGCCTCCAG
AGACTGGTGCAGGTTATCATCCTGATGGAACTGTTCAAGTAAGCAATGGCAGCCTTGCCTTTTACCCAGC
ACCCACGAGTATGTTTCCCAGACCTGCTCAGCCATTTATCAGTAGTCGGGGGACTCTGAGAGGGTGTTCA
CATGGAGGGAGGTTACTAATGAGTTCCTATCAGTCTCCTGGTGGCTACAAAGGTTTTGATAGTTACAGAG
GACTTCCTTCAGTTTCAAGTGGGAATTACAGCCAGCTGCAGCTGCAAGCTAGAGAATATTCTGGAACAGC
TTACTCTCAAAGGGATAATTTCCAGCAGTGTTATAAAAGATCAGGGACATCTAGTGGTCTTCAGGCAAAT
TCAAGAGCAGGGTGGAGTGACTCCTCTCAGGTGAGCAGCCCAGAAAGAGACAGCGAGACTTTTAACAGTG
GAGACTCTGGGCTAGGAGACTCTCGGAGCATGACCCCAGTGGATGTGCCAGTGACAAGCCCAGCAGCCGC
CATCCTGCCAGTCCATATCTATCCCCTGCCTCAGCAAATGCGAGTTGCCTTCTCAGCTGCCAGAACATCC
AATCTGGCTCCTGGAACTTTAGACCAACCTATTGTGTTTGATCTTCTCCTGAACAACTTGGGAGAGACCT
TTGATCTTCAGCTTGGTAGATTCAATTGCCCAGTGAATGGCACTTACGTGTTCATTTTTCACATGCTAAA
GCTGGCTGTGAATGTACCACTGTATGTCAACCTGATGAAGAATGAGGAGGTCTTGGTGTCAGCCTATGCC
AACGATGGTGCTCCAGACCATGAGACAGCAAGCAACCATGCCGTTCTCCAGCTCCTCCAGGGAGACCAGA
TATGGCTGCGCTTACACAGGGGAGCGATTTATGGAAGTAGCTGGAAATACTCTACATTTTCAGGCTATCT
TCTTTATCAAGATTAA

Translation (1031 aa):
MKSAKSQVNQDQQGENQRALSPLQSTLSSAASPSQAYETYIDNGLICLKHKIRNIEKKKLKLEDYKDRLK
NGEQLNPDQLEAVEKYEEVLHNLEFAKELQKTFSALSQDLLKAQKKAQRREHMLKLETEKKKLRTMLQIQ
YVLQNLTQEHVQKDFKGGLNGAMYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGSEK
TVVGTTYKHVKDLLSKLLHSGYFESVPVLRNSKEKAEEVLMQSEMKKQLLKSESIKESESLTELVQPEIQ
PQEFLNRRYMTEVKFSRKQENVEQSWEADYARKPSLLKCWNTLPEPDGQEKKKESLESWKSSLKTQEVSK
PVVSLVQGKLRPTLQEEQKQQVPITPVSQWKPESPKSKVGSPQEEQNVQETPKPWVVQSQKEQDPKKLPP
GSWAVSVQSEQSGSRSWTTPVCREQASVQPGTPVSWENNAENQKHSLVPQSQISLKSWGAASAGLLPNGQ
VLTRKLNVEPKDVPKPLPQPIDSSSALPKDPVLRKEKLQDLMSQIQGTYNFMQESVLDFDKPSSAIPSSQ
PPSACPVSTVSAEQNLSNQSDFLQEPSQASSPVTCSSNACLVTTDQASSGSETEFTTSETPEMVVSPCKP
KPASALASPNPPLSKSFQLPPASGSSEAISTAPFQAMQTVFNVNAPLPPRKEQEMKEPPYSSGYNQNFTS
SSTQTVSQCQLPAVHIDQTTQPPETGAGYHPDGTVQVSNGSLAFYPAPTSMFPRPAQPFISSRGTLRGCS
HGGRLLMSSYQSPGGYKGFDSYRGLPSVSSGNYSQLQLQAREYSGTAYSQRDNFQQCYKRSGTSSGLQAN
SRAGWSDSSQVSSPERDSETFNSGDSGLGDSRSMTPVDVPVTSPAAAILPVHIYPLPQQMRVAFSAARTS
NLAPGTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLAVNVPLYVNLMKNEEVLVSAYA
NDGAPDHETASNHAVLQLLQGDQIWLRLHRGAIYGSSWKYSTFSGYLLYQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH