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Report for CCDS39551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39551.1 Public Mus musculus 6 Hmces 23 108 98 CCDS HistoryNCBI Gene:232210Re-query CCDS DB by CCDS ID:39551.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032141.13 ENSMUSP00000032141.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032141.13Link to Ensembl Protein Viewer:ENSMUSP00000032141.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032141Re-query CCDS DB by Protein ID:ENSMUSP00000032141
Original member Current member EBI ENSMUST00000113606.1 ENSMUSP00000109236.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113606.1Link to Ensembl Protein Viewer:ENSMUSP00000109236.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113606Re-query CCDS DB by Protein ID:ENSMUSP00000109236
Original member NCBI NM_173737.2 NP_776098.1 Updated not alive Link to Nucleotide Sequence:NM_173737.2Link to Protein Sequence:NP_776098.1Re-query CCDS DB by Nucleotide ID:NM_173737Re-query CCDS DB by Protein ID:NP_776098
Current member NCBI NM_173737.3 NP_776098.1 Accepted alive Link to Nucleotide Sequence:NM_173737.3Link to Protein Sequence:NP_776098.1Re-query CCDS DB by Nucleotide ID:NM_173737Re-query CCDS DB by Protein ID:NP_776098Link to BLAST:NP_776098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776098.1 353 Q8R1M0 353 100% 0 0

Chromosomal Locations for CCDS 39551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87914513 87914695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87917839 87917982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87921526 87921651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87925632 87925810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87933242 87933434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87936090 87936326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGTGCGGGCGAACGTCCTGTCACTTGCCCAGAGAGGTTCTCACCAGGGCCTGCGCCTATCAGGATCGGC
AGGGCCGGCGGCGGCTCCCGCAGTGGAGGGACCCCGACAAGTACTGCCCCTCCTACAACAAGAGCCCGCA
GTCCAGCAGCCCCGTGCTGCTCTCCAGACTGCACTTTGAGAAGGATGCAGACTCATCAGATCGGATAATT
ATTCCCATGCGATGGGGCTTAGTCCCATCTTGGTTCAAAGAAAGTGATCCTTCTAAGCTGCAGTTCAACA
CTACCAACTGTCGTAGTGATACCATAATGGAGAAGCAGTCATTCAAGGTTCCTCTGGGGAAAGGACGGCG
GTGTGTTGTTTTAGCAGATGGATTCTACGAGTGGCAGCGGTGTCAGGGAACAAACCAGAGGCAACCATAC
TTCATCTATTTTCCTCAAATCAAGACAGAGAAGTCAGGTGGGAACGATGCTTCAGACAGCTCTGACAACA
AGGAAAAGGTCTGGGACAACTGGAGGCTGCTGACAATGGCAGGGATCTTTGACTGCTGGGAAGCGCCAGG
GGGAGAGTGCCTGTATTCCTACAGCATCATCACTGTGGATTCCTGCAGAGGTTTGAGTGACATCCACAGC
AGGATGCCTGCCATACTAGATGGAGAAGAAGCAGTCTCCAAATGGCTCGACTTTGGTGAGGTCGCCACTC
AGGAAGCTCTGAAGCTAATCCACCCCATAGACAATATCACCTTCCATCCAGTTTCTCCAGTGGTGAACAA
TTCCCGAAACAACACTCCGGAGTGTCTGGCGCCTGCTGACTTGCTGGTTAAGAAGGAGCCCAAGGCAAAT
GGCAGCAGTCAAAGGATGATGCAGTGGCTGGCTACAAAGTCACCCAAAAAGGAAGTCCCTGACTCACCCA
AAAAGGATGCATCAGGTCTACCCCAGTGGTCCAGCCAGTTTCTCCAGAAGAGCCCATTGCCTGCTAAAAG
AGGTGCTACCAGCAGCTTCCTGGATCGATGGCTGAAGCAGGAGAAGGAGGATGAGCCCATGGCCAAGAAG
CCTAACAGCTAG

Translation (353 aa):
MCGRTSCHLPREVLTRACAYQDRQGRRRLPQWRDPDKYCPSYNKSPQSSSPVLLSRLHFEKDADSSDRII
IPMRWGLVPSWFKESDPSKLQFNTTNCRSDTIMEKQSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPY
FIYFPQIKTEKSGGNDASDSSDNKEKVWDNWRLLTMAGIFDCWEAPGGECLYSYSIITVDSCRGLSDIHS
RMPAILDGEEAVSKWLDFGEVATQEALKLIHPIDNITFHPVSPVVNNSRNNTPECLAPADLLVKKEPKAN
GSSQRMMQWLATKSPKKEVPDSPKKDASGLPQWSSQFLQKSPLPAKRGATSSFLDRWLKQEKEDEPMAKK
PNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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