NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51453.1 Public Mus musculus 5 Cib4 23 108 98 CCDS HistoryNCBI Gene:73259Re-query CCDS DB by CCDS ID:51453.1Re-query CCDS DB by GeneID:73259See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065486.2 ENSMUSP00000066222.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065486.2Link to Ensembl Protein Viewer:ENSMUSP00000066222.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000065486Re-query CCDS DB by Protein ID:ENSMUSP00000066222
Original member NCBI NM_028483.1 NP_082759.1 Updated not alive Link to Nucleotide Sequence:NM_028483.1Link to Protein Sequence:NP_082759.1Re-query CCDS DB by Nucleotide ID:NM_028483Re-query CCDS DB by Protein ID:NP_082759
Current member NCBI NM_028483.2 NP_082759.1 Accepted alive Link to Nucleotide Sequence:NM_028483.2Link to Protein Sequence:NP_082759.1Re-query CCDS DB by Nucleotide ID:NM_028483Re-query CCDS DB by Protein ID:NP_082759Link to BLAST:NP_082759.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082759.1 185 Q9D9N5 185 100% 0 0

Chromosomal Locations for CCDS 51453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 30485737 30485767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30487445 30487533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30488485 30488594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30498032 30498173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30534190 30534286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30544666 30544700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 30545726 30545779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGGGCAGTGTTTAAGGTACCAGATGCAGTGGGAGGACCTGGAAGAGTACCAGGCTCTGACCTTCCTGA
CAAGAAATGAGATTCTGTGCATCCACGACACCTTCCTGAAGCTCTGTCCCTCGGGCAAGCACTATAAGGA
GGCCACACTGACCATGGACCAGGTCAGCTCCCTTCCTGCTCTGAGGGTCAACCCTTTCAGAGACCGCATC
TGCAGGGTATTCTCCCACGACAACGTGTTCTCCTTTGAAGACGTGCTGGGCATGGCATCTGTATTCAGTG
AGCAGGCCTGCCCCAGCCTGAAGATTGAGTATGCCTTTCGTATCTATGATTTTAACGAGAATGGTTTCAT
TGATGAGGAGGACCTCGAGGAGATTGTGCTAAGACTACTGAAAAGTGACGACGCGTCTGAGGACCTGCTG
ATGGACGTCATGCACCATGTCCTGAGTGAGTCAGATCTGGACAATGACAGTATGCTTTCCTTCTCCGAGT
TCGAACACGCCATGGCCAAATCTCCAGATTTCATGAACTCTTTTCGGATTCACTTCTGGGGCTGCTGA

Translation (185 aa):
MGQCLRYQMQWEDLEEYQALTFLTRNEILCIHDTFLKLCPSGKHYKEATLTMDQVSSLPALRVNPFRDRI
CRVFSHDNVFSFEDVLGMASVFSEQACPSLKIEYAFRIYDFNENGFIDEEDLEEIVLRLLKSDDASEDLL
MDVMHHVLSESDLDNDSMLSFSEFEHAMAKSPDFMNSFRIHFWGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH