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Report for CCDS15062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15062.1 Public Mus musculus 1 Slc23a3 23 108 98 CCDS HistoryNCBI Gene:22626Re-query CCDS DB by CCDS ID:15062.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027405.5 ENSMUSP00000027405.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027405.5Link to Ensembl Protein Viewer:ENSMUSP00000027405.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000027405Re-query CCDS DB by Protein ID:ENSMUSP00000027405
Original member Current member NCBI NM_194333.3 NP_919314.2 Accepted alive Link to Nucleotide Sequence:NM_194333.3Link to Protein Sequence:NP_919314.2Re-query CCDS DB by Nucleotide ID:NM_194333Re-query CCDS DB by Protein ID:NP_919314Link to BLAST:NP_919314.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919314.2 611 Q60850-1 611 99.6727% 0 2

Chromosomal Locations for CCDS 15062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75125729 75126018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75126342 75126437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75128473 75128640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75128904 75129009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75129398 75129651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75131661 75131775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75132152 75132272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75132599 75132780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75132951 75133027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75133195 75133292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75133401 75133558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75133685 75133855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGAGCCGATCACCTCTCCATCCCATTCCACTTCTATCTGAGGGCTACCAGGATACCCCTGCTCCCCTGC
CACCACTGCTACCCCCTCTCCAGAATCCCTCCTCCCGTTCTTGGGCCTCTCGGGTGTGTGGGCCTTCCAC
CTGGGGGCTCAGCTGTCTTCTGGCTCTACAGCATTTCCTGGTCTTGGCATCTTTGCTCTGGGCCTCCCAC
CTGCTGCTGCTTCATGGTCTTCCCCCAGGAGGGCTCTCATACCCACCCGCTCAGCTCCTGGCTTCCAGTT
TCTTTTCATGTGGCCTGTCTACGGTCCTGCAGACTTGGATGGGCAGCAGGCTACCTCTAATCCAGGCTCC
GTCCCTAGAGTTTCTTATCCCCGCACTGGTGCTGACAAACCAGAAGCTACCTCTGACGACCAAGACACCT
GGAAATGCCTCCCTCTCACTGCCCCTGTGTAGTTTGACAAGAAGCTGCCATGGCCTGGAGCTCTGGAACA
CTTCTCTCCGAGAGGTGTCGGGGGCAGTGGTGGTGTCCGGGCTGCTGCAGGGCACTATAGGACTTCTAGG
GGTGCCTGGCCGTGTGTTCCCCTACTGTGGGCCACTGGTGCTGGCTCCCAGCCTGGTTGTGGCAGGGCTT
TCTGCCCACAAGGAGGTGGCCCAGTTCTGTTCTGCTCACTGGGGCCTGGCCTTGCTGCTCATCCTGCTCA
TGGTGGTATGCTCTCAGCACCTGGGTTCATGCCAGATACCCCTTTGCTCCTGGAGGCCATCTTCAACTTC
AACTCACATTTGTATTCCCGTCTTCCGACTCCTTTCGGTGCTTGCCCCTGTGGCCTGTGTGTGGTTCATC
TCTGCCTTTGTGGGTACGAGTGTTATCCCTCTGCAGCTGTCTGAGCCCTCGGATGCACCTTGGTTTTGGC
TGCCACACCCAGGTGAGTGGGAATGGCCCTTGCTGACACCCAGGGCCCTGGCTGCAGGCATCTCCATGGC
TTTGGCAGCCTCCACCAGCTCCTTGGGTTGCTATGCTCTGTGTGGCCAGCTGCTGCGTTTGTCTCCTCCG
CCACCTCATGCCTGCAGTCGAGGGCTGAGCCTGGAGGGGCTGGGCAGTGTGCTGGCAGGGCTGCTGGGGA
GCCCCCTGGGCACTGCATCCAGCTTCCCCAACGTAGGCACAGTGAGTCTTTTTCAGACTGGCTCTCGGAG
AGTGGCCCACCTAGTGGGGTTGTTCTGCATGGGGCTTGGGCTCTCCCCAAGGCTGGCTCAGCTATTTACC
AGCATCCCACTGCCTGTGCTTGGTGGGGTACTGGGAGTGACCCAGGCTGTAGTTCTGTCTGCTGGATTCT
CCAGCTTTCACCTGGCTGACATTGACTCTGGGCGAAATGTCTTCATCGTGGGCTTCTCCATCTTCATGGC
CTTGCTTTTGCCAAGGTGGCTCAGGGAAGCCCCAGTCCTGCTCAACACAGGCTGGAGCCCCCTGGATATG
TTTCTTCGTTCTTTGCTGGCAGAACCCATTTTCTTAGCTGGTCTACTGGGCTTTCTCCTAGAAAACACTA
TATCTGGTACACGGGCTGAGAGAGGCTTAGGTCAGAGGCTGCCAACTTCTTTCACTGCCCAAGAAATTCA
AATGCTTCAGCAATCCAGGAGGAAAGCTGCTCAAGAGTATGGGCTTCCTTTACCCATCAGAAACCTGTGT
TCCTGCATCCCACAGCCTCTCCACTGCCTCTGTCCAATGCCTGAAGACTCTGGGGATGAAGGAGGATCCT
CTAAAACAGGAGAGAGAGCCGACTTGTTGCCTAACTCTGGGGAATCGTACTCCACAGCTAGCAGAGAAGG
GGTTAGGTCCCAGTAA

Translation (611 aa):
MSRSPLHPIPLLSEGYQDTPAPLPPLLPPLQNPSSRSWASRVCGPSTWGLSCLLALQHFLVLASLLWASH
LLLLHGLPPGGLSYPPAQLLASSFFSCGLSTVLQTWMGSRLPLIQAPSLEFLIPALVLTNQKLPLTTKTP
GNASLSLPLCSLTRSCHGLELWNTSLREVSGAVVVSGLLQGTIGLLGVPGRVFPYCGPLVLAPSLVVAGL
SAHKEVAQFCSAHWGLALLLILLMVVCSQHLGSCQIPLCSWRPSSTSTHICIPVFRLLSVLAPVACVWFI
SAFVGTSVIPLQLSEPSDAPWFWLPHPGEWEWPLLTPRALAAGISMALAASTSSLGCYALCGQLLRLSPP
PPHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFT
SIPLPVLGGVLGVTQAVVLSAGFSSFHLADIDSGRNVFIVGFSIFMALLLPRWLREAPVLLNTGWSPLDM
FLRSLLAEPIFLAGLLGFLLENTISGTRAERGLGQRLPTSFTAQEIQMLQQSRRKAAQEYGLPLPIRNLC
SCIPQPLHCLCPMPEDSGDEGGSSKTGERADLLPNSGESYSTASREGVRSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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