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Report for CCDS25918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25918.1 Public Mus musculus 12 Nfkbia 23 108 98 CCDS HistoryNCBI Gene:18035Re-query CCDS DB by CCDS ID:25918.1Re-query CCDS DB by GeneID:18035See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021413.8 ENSMUSP00000021413.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021413.8Link to Ensembl Protein Viewer:ENSMUSP00000021413.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021413Re-query CCDS DB by Protein ID:ENSMUSP00000021413
Original member Current member NCBI NM_010907.2 NP_035037.2 Accepted alive Link to Nucleotide Sequence:NM_010907.2Link to Protein Sequence:NP_035037.2Re-query CCDS DB by Nucleotide ID:NM_010907Re-query CCDS DB by Protein ID:NP_035037Link to BLAST:NP_035037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035037.2 314 Q9Z1E3 314 100% 0 0

Chromosomal Locations for CCDS 25918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 55489922 55489969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55490406 55490666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55490771 55490859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55491120 55491330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55491670 55491778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 55492300 55492526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGTTTCAGCCAGCTGGGCACGGCCAGGACTGGGCCATGGAGGGCCCGCGGGATGGCCTCAAGAAGGAGC
GCTTGGTGGACGATCGCCACGACAGCGGCCTGGACTCCATGAAGGACGAGGAGTACGAGCAAATGGTGAA
GGAGCTGCGGGAGATCCGCCTGCAGCCGCAGGAGGCGCCGCTGGCCGCCGAGCCCTGGAAGCAGCAGCTC
ACGGAGGACGGAGACTCGTTCCTGCACTTGGCAATCATCCACGAAGAGAAGCCGCTGACCATGGAAGTCA
TTGGTCAGGTGAAGGGAGACCTGGCCTTCCTCAACTTCCAGAACAACCTGCAGCAGACTCCACTCCACTT
GGCTGTGATCACCAACCAGCCAGGAATTGCTGAGGCACTTCTGAAAGCTGGCTGTGATCCTGAGCTCCGA
GACTTTCGAGGAAATACCCCTCTACATCTTGCCTGTGAGCAGGGCTGCCTGGCCAGTGTAGCAGTCTTGA
CGCAGACCTGCACACCCCAGCATCTCCACTCCGTCCTGCAGGCCACCAACTACAATGGCCACACGTGTCT
GCACCTAGCCTCTATCCACGGCTACCTGGCCATCGTGGAGCACTTGGTGACTTTGGGTGCTGATGTCAAC
GCTCAGGAGCCCTGCAATGGCCGGACAGCCCTCCACCTTGCGGTGGACCTGCAGAATCCTGACCTGGTTT
CGCTCTTGTTGAAATGTGGGGCTGATGTCAACAGGGTAACCTACCAAGGCTACTCCCCCTACCAGCTTAC
CTGGGGCCGCCCAAGTACCCGGATACAGCAGCAGCTGGGCCAGCTGACCCTGGAAAATCTCCAGATGCTA
CCCGAGAGCGAGGATGAGGAGAGCTATGACACGGAGTCAGAATTCACAGAGGATGAGCTGCCCTATGATG
ACTGTGTGTTTGGAGGCCAGCGTCTGACATTATAA

Translation (314 aa):
MFQPAGHGQDWAMEGPRDGLKKERLVDDRHDSGLDSMKDEEYEQMVKELREIRLQPQEAPLAAEPWKQQL
TEDGDSFLHLAIIHEEKPLTMEVIGQVKGDLAFLNFQNNLQQTPLHLAVITNQPGIAEALLKAGCDPELR
DFRGNTPLHLACEQGCLASVAVLTQTCTPQHLHSVLQATNYNGHTCLHLASIHGYLAIVEHLVTLGADVN
AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML
PESEDEESYDTESEFTEDELPYDDCVFGGQRLTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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