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Report for CCDS37942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37942.1 Public Mus musculus 19 Zng1 23 108 98 CCDS HistoryNCBI Gene:226043Re-query CCDS DB by CCDS ID:37942.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025815.9 ENSMUSP00000025815.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025815.9Link to Ensembl Protein Viewer:ENSMUSP00000025815.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025815Re-query CCDS DB by Protein ID:ENSMUSP00000025815
Original member Current member NCBI NM_146097.3 NP_666209.1 Accepted alive Link to Nucleotide Sequence:NM_146097.3Link to Protein Sequence:NP_666209.1Re-query CCDS DB by Nucleotide ID:NM_146097Re-query CCDS DB by Protein ID:NP_666209Link to BLAST:NP_666209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666209.1 393 Q8VEH6-1 393 100% 0 0

Chromosomal Locations for CCDS 37942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 24920593 24920702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24921021 24921150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24922597 24922662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24922756 24922824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24928327 24928375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24931664 24931720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24938396 24938440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24940749 24940835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24942683 24942729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24948069 24948106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24949202 24949261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24953260 24953351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24955336 24955432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24957904 24957990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 24961384 24961531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGTTACCTGCTGTGAAAACTGTGGAGGCGGAAGAAGAGTACGCGGAGGATTGTCCTGAATTGGTCCCCA
TTGAGACCAAGAACCAAGAAGAGGAAAATCTTGACTTCATCACTAAGATTCCAGTCACAATTGTCACCGG
GTACTTAGGTGCTGGAAAGACAACACTTCTGAACTACATTTTGACAGAACAACATAATAGAAAAATAGCA
GTGATTTTAAATGAATTTGGAGAAGGGAGTGCAGTAGAGAAATCCTTAGCTGTCAGTCAAGGTGGAGAAC
TCTATGAAGAATGGCTGGAACTTAGAAATGGTTGCCTCTGCTGTTCAGTCAAGGACAGTGGCCTTAGAGC
TATAGAGAATCTGATGCAAAAGAAGGGCAAGTTTGACTACATACTCTTAGAGACCACTGGGCTAGCAGAT
CCTGGTGCAGTGGCTTCTATGTTTTGGGTTGATGCTGAGTTAGGGAGTGATATTTATCTTGATGGTATCA
TAACTGTTGTAGATTCAAAATATGGATTAAAACATTTAACTGAAGAAAAACCTGATGGCCTTGTCAATGA
AGCTACTAGGCAAGTTGCATTGGCAGACATGATTCTCATCAATAAAACAGACTTGGTTTCAGAAGAGGAG
CTAAACAACTTAAGAACAACTATCAGATCAATAAATGGACTGGGAAAAGTTTTAGAAACTCAGAGATCAA
GAGTTCATCTCTCAAATATATTAGACCTTCATGCCTATGATATTCTCTCTGGAATAAGTTTACAGAAAAA
GCTCCAGCATGTGTCAACAGCACCCCACCTTGATCAGAGTATTGTTACAGTCACATTTGAAGTACCAGGA
AGTGCAAAGGAAGAATGTCTAAATGTATTTATCCAGAATCTCCTGTGGGAAAAGAACGTGAAAAACAAGG
ACGGCCACTGCATGGAGGTCATTCGGCTAAAGGGACTGGTGTCTATCAAAGACAAACCACAGCAAATGAT
TGTGCAAGGCATCCATGAGCTGTACGACCTGGAAGAAAGCCTAGTGAACTGGAAGGATGATGCGGAGAGA
GCGTGTCAGCTGGTCTTCATTGGTAGAAATTTAGATAAGGATGTTCTTCAACAACTCTTCCTCACTGCTG
TGGCAGAGGCAGAAGAGCAAAGGACAGCACCAGGCAGAGATGGAGTTTGTCCATCGCACTAG

Translation (393 aa):
MLPAVKTVEAEEEYAEDCPELVPIETKNQEEENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNRKIA
VILNEFGEGSAVEKSLAVSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLAD
PGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEATRQVALADMILINKTDLVSEEE
LNNLRTTIRSINGLGKVLETQRSRVHLSNILDLHAYDILSGISLQKKLQHVSTAPHLDQSIVTVTFEVPG
SAKEECLNVFIQNLLWEKNVKNKDGHCMEVIRLKGLVSIKDKPQQMIVQGIHELYDLEESLVNWKDDAER
ACQLVFIGRNLDKDVLQQLFLTAVAEAEEQRTAPGRDGVCPSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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