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Report for CCDS6022.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6022.1 Public Homo sapiens 8 HR 24 110 108 CCDS HistoryNCBI Gene:55806Re-query CCDS DB by CCDS ID:6022.1Re-query CCDS DB by GeneID:55806See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6022.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381418.9 ENSP00000370826.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381418.9Link to Ensembl Protein Viewer:ENSP00000370826.4Re-query CCDS DB by Nucleotide ID:ENST00000381418Re-query CCDS DB by Protein ID:ENSP00000370826
Original member Current member EBI ENST00000680789.1 ENSP00000505181.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680789.1Link to Ensembl Protein Viewer:ENSP00000505181.1Re-query CCDS DB by Nucleotide ID:ENST00000680789Re-query CCDS DB by Protein ID:ENSP00000505181
Original member Current member NCBI NM_005144.5 NP_005135.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005144.5Link to Protein Sequence:NP_005135.2Re-query CCDS DB by Nucleotide ID:NM_005144Re-query CCDS DB by Protein ID:NP_005135Link to BLAST:NP_005135.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005135.2 1189 O43593-1 1189 100% 0 0

Chromosomal Locations for CCDS 6022.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22115700 22115762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22116300 22116428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22116875 22117039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22118950 22119065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22119164 22119283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22119760 22119890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120104 22120173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120342 22120507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22120716 22120958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22121065 22121228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22121613 22121694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22122493 22122608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22122790 22122879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22123649 22123813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22125311 22125504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22125582 22125732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22127037 22127829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22128559 22129170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3570 nt):
ATGGAGAGTACGCCCAGCTTCCTGAAGGGCACCCCAACCTGGGAGAAGACGGCCCCAGAGAACGGCATCG
TG
AGACAGGAGCCCGGCAGCCCGCCTCGAGATGGACTGCACCATGGGCCGCTGTGCCTGGGAGAGCCTGC
T
CCCTTTTGGAGGGGCGTCCTGAGCACCCCAGACTCCTGGCTTCCCCCTGGCTTCCCCCAGGGCCCCAAG
GAC
ATGCTCCCACTTGTGGAGGGCGAGGGCCCCCAGAATGGGGAGAGGAAGGTCAACTGGCTGGGCAGCA
AA
GAGGGACTGCGCTGGAAGGAGGCCATGCTTACCCATCCGCTGGCATTCTGCGGGCCAGCGTGCCCACC
T
CGCTGTGGCCCCCTGATGCCTGAGCATAGTGGTGGCCATCTCAAGAGTGACCCTGTGGCCTTCCGGCCC
TGG
CACTGCCCTTTCCTTCTGGAGACCAAGATCCTGGAGCGAGCTCCCTTCTGGGTGCCCACCTGCTTGC
CA
CCCTACCTAGTGTCTGGCCTGCCCCCAGAGCATCCATGTGACTGGCCCCTGACCCCGCACCCCTGGGT
A
TACTCCGGGGGCCAGCCCAAAGTGCCCTCTGCCTTCAGCTTAGGCAGCAAGGGCTTTTACTACAAGGAT
CCG
AGCATTCCCAGGTTGGCAAAGGAGCCCTTGGCAGCTGCGGAACCTGGGTTGTTTGGCTTAAACTCTG
GT
GGGCACCTGCAGAGAGCCGGGGAGGCCGAACGCCCTTCACTGCACCAGAGGGATGGAGAGATGGGAGC
T
GGCCGGCAGCAGAATCCTTGCCCGCTCTTCCTGGGGCAGCCAGACACTGTGCCCTGGACCTCCTGGCCC
GCT
TGTCCCCCAGGCCTTGTTCATACTCTTGGCAACGTCTGGGCTGGGCCAGGCGATGGGAACCTTGGGT
AC
CAGCTGGGGCCACCAGCAACACCAAGGTGCCCCTCTCCTGAGCCGCCTGTCACCCAGCGGGGCTGCTG
T
TCATCCTACCCACCCACTAAAGGTGGGGGTCTTGGCCCTTGTGGGAAGTGCCAGGAGGGCCTGGAGGGG
GGT
GCCAGTGGAGCCAGCGAACCCAGCGAGGAAGTGAACAAGGCCTCTGGCCCCAGGGCCTGTCCCCCCA
GC
CACCACACCAAGCTGAAGAAGACATGGCTCACACGGCACTCGGAGCAGTTTGAATGTCCACGCGGCTG
C
CCTGAGGTCGAGGAGAGGCCGGTTGCTCGGCTCCGGGCCCTCAAAAGGGCAGGCAGCCCCGAGGTCCAG
GGA
GCAATGGGCAGTCCAGCCCCCAAGCGGCCACCGGACCCTTTTCCAGGCACTGCAGAACAGGGGGCTG
GG
GGTTGGCAGGAGGTGCGGGACACATCGATAGGGAACAAGGATGTGGACTCGGGACAGCATGATGAGCA
G
AAAGGACCCCAAGATGGCCAGGCCAGTCTCCAGGACCCGGGACTTCAGGACATACCATGCCTGGCTCTC
CCT
GCAAAACTGGCTCAATGCCAAAGTTGTGCCCAGGCAGCTGGAGAGGGAGGAGGGCACGCCTGCCACT
CT
CAGCAAGTGCGGAGATCGCCTCTGGGAGGGGAGCTGCAGCAGGAGGAAGACACAGCCACCAACTCCAG
C
TCTGAGGAAGGCCCAGGGTCCGGCCCTGACAGCCGGCTCAGCACAGGCCTCGCCAAGCACCTGCTCAGT
GGT
TTGGGGGACCGACTGTGCCGCCTGCTGCGGAGGGAGCGGGAGGCCCTGGCTTGGGCCCAGCGGGAAG
GC
CAAGGGCCAGCCGTGACAGAGGACAGCCCAGGCATTCCACGCTGCTGCAGCCGTTGCCACCATGGACT
C
TTCAACACCCACTGGCGATGTCCCCGCTGCAGCCACCGGCTGTGTGTGGCCTGTGGTCGTGTGGCAGGC
ACT
GGGCGGGCCAGGGAGAAAGCAGGCTTTCAGGAGCAGTCCGCGGAGGAGTGCACGCAGGAGGCCGGGC
AC
GCTGCCTGTTCCCTGATGCTGACCCAGTTTGTCTCCAGCCAGGCTTTGGCAGAGCTGAGCACTGCAAT
G
CACCAGGTCTGGGTCAAGTTTGATATCCGGGGGCACTGCCCCTGCCAAGCTGATGCCCGGGTATGGGCC
CCC
GGGGATGCAGGCCAGCAGAAGGAATCAACACAGAAAACGCCCCCAACTCCACAACCTTCCTGCAATG
GC
GACACCCACAGGACCAAGAGCATCAAAGAGGAGACCCCCGATTCCGCTGAGACCCCAGCAGAGGACCG
T
GCTGGCCGAGGGCCCCTGCCTTGTCCTTCTCTCTGCGAACTGCTGGCTTCTACCGCGGTCAAACTCTGC
TTG
GGCCATGAGCGAATACACATGGCCTTCGCCCCCGTCACTCCGGCCCTGCCCAGTGATGACCGCATCA
CC
AACATCCTGGACAGCATTATCGCACAGGTGGTGGAACGGAAGATCCAGGAGAAAGCCCTGGGGCCGGG
G
CTTCGAGCTGGCCCGGGTCTGCGCAAGGGCCTGGGCCTGCCCCTCTCTCCAGTGCGGCCCCGGCTGCCT
CCC
CCAGGGGCTTTGCTGTGGCTGCAGGAGCCCCAGCCTTGCCCTCGGCGTGGCTTCCACCTCTTCCAGG
AG
CACTGGAGGCAGGGCCAGCCTGTGTTGGTGTCAGGGATCCAAAGGACATTGCAGGGCAACCTGTGGGG
G
ACAGAAGCTCTTGGGGCACTTGGAGGCCAGGTGCAGGCGCTGAGCCCCCTCGGACCTCCCCAGCCCAGC
AGC
CTGGGCAGCACAACATTCTGGGAGGGCTTCTCCTGGCCTGAGCTTCGCCCAAAGTCAGACGAGGGCT
CT
GTCCTCCTGCTGCACCGAGCTTTGGGGGATGAGGACACCAGCAGGGTGGAGAACCTAGCTGCCAGTCT
G
CCACTTCCGGAGTACTGCGCCCTCCATGGAAAACTCAACCTGGCTTCCTACCTCCCACCGGGCCTTGCC
CTG
CGTCCACTGGAGCCCCAGCTCTGGGCAGCCTATGGTGTGAGCCCGCACCGGGGACACCTGGGGACCA
AG
AACCTCTGTGTGGAGGTGGCCGACCTGGTCAGCATCCTGGTGCATGCCGACACACCACTGCCTGCCTG
G
CACCGGGCACAGAAAGACTTCCTTTCAGGCCTGGACGGGGAGGGGCTCTGGTCTCCGGGCAGCCAGGTC
AGC
ACTGTGTGGCACGTGTTCCGGGCACAGGACGCCCAGCGCATCCGCCGCTTTCTCCAGATGGTGTGCC
CG
GCCGGGGCAGGCGCCCTGGAGCCTGGCGCCCCAGGCAGCTGCTACCTGGATGCAGGGCTGCGGCGGCG
C
CTGCGGGAGGAGTGGGGCGTGAGCTGCTGGACCCTGCTCCAGGCCCCCGGAGAGGCCGTGCTGGTGCCT
GCA
GGGGCTCCCCACCAGGTGCAGGGCCTGGTGAGCACAGTCAGCGTCACTCAGCACTTCCTCTCCCCTG
AG
ACCTCTGCCCTCTCTGCTCAGCTCTGCCACCAGGGACCCAGCCTTCCCCCTGACTGCCACCTGCTTTA
T
GCCCAGATGGACTGGGCTGTGTTCCAAGCAGTGAAGGTGGCCGTGGGGACATTACAGGAGGCCAAATAG


Translation (1189 aa):
MESTPSFLKGTPTWEKTAPENGIVRQEPGSPPRDGLHHGPLCLGEPAPFWRGVLSTPDSWLPPGFPQGPK
D
MLPLVEGEGPQNGERKVNWLGSKEGLRWKEAMLTHPLAFCGPACPPRCGPLMPEHSGGHLKSDPVAFRP
W
HCPFLLETKILERAPFWVPTCLPPYLVSGLPPEHPCDWPLTPHPWVYSGGQPKVPSAFSLGSK
GFYYKD
P
SIPRLAKEPLAAAEPGLFGLNSGGHLQRAGEAERPSLHQRDGEMGAGRQQNPCPLFLGQPDTVPWTSWP
A
CPPGLVHTLGNVWAGPGDGNLGYQLGPPATPRCPSPEPPVTQRGCCSSYPPTKGGGLGPCGKCQEGLEG
G
ASGASEPSEEVNKASGPRACPPSHHTKLKKTWLTRHSEQFECPRGCPEVEERPVARLRALKRAGSPEVQ
G
AMGSPAPKRPPDPFPGTAEQGAGGWQEVRDTSIGNKDVDSGQHDEQK
GPQDGQASLQDPGLQDIPCLAL
P
AKLAQCQSCAQAAGEGGGHACHSQQVR
RSPLGGELQQEEDTATNSSSEEGPGSGPDSRLSTGLAKHLLS
G
LGDRLCRLLRREREALAWAQRE
GQGPAVTEDSPGIPRCCSRCHHGLFNTHWRCPRCSHRLCVACGRVAG
T
GRAREKA
GFQEQSAEECTQEAGHAACSLMLTQFVSSQALAELSTAMHQVWVKFDIRGHCPCQADARVWA
P
GDAGQQ
KESTQKTPPTPQPSCNGDTHRTKSIKEETPDSAETPAEDRAGRGPLPCPSLCELLASTAVKLC
L
GHERIHMAFAPVTPALPS
DDRITNILDSIIAQVVERKIQEKALGPGLRAGPGLRKGLGLPLSPVRPRLP
P
PGALLWLQEPQPCPRRGFHLFQEHWRQGQ
PVLVSGIQRTLQGNLWGTEALGALGGQVQALSPLGPPQPS
S
LGSTTFWEGFSWPE
LRPKSDEGSVLLLHRALGDEDTSRVENLAASLPLPEYCALHGKLNLASYLPPGLA
L
RPLEPQLWAAY
GVSPHRGHLGTKNLCVEVADLVSILVHADTPLPAWHRAQKDFLSGLDGEGLWSPGSQV
S
TVWHVFRAQDAQRIRRFLQM
VCPAGAGALEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVP
A
GAPHQ
VQGLVSTVSVTQHFLSPETSALSAQLCHQGPSLPPDCHLLYAQMDWAVFQAVKVAVGTLQEAK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser