NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16958.1 Public Mus musculus 2 Gdf5 23 108 98 CCDS HistoryNCBI Gene:14563Re-query CCDS DB by CCDS ID:16958.1Re-query CCDS DB by GeneID:14563See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16958.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040162.2 ENSMUSP00000048079.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040162.2Link to Ensembl Protein Viewer:ENSMUSP00000048079.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040162Re-query CCDS DB by Protein ID:ENSMUSP00000048079
Original member NCBI NM_008109.3 NP_032135.2 Updated not alive Link to Nucleotide Sequence:NM_008109.3Link to Protein Sequence:NP_032135.2Re-query CCDS DB by Nucleotide ID:NM_008109Re-query CCDS DB by Protein ID:NP_032135
Current member NCBI NM_008109.4 NP_032135.2 Accepted alive Link to Nucleotide Sequence:NM_008109.4Link to Protein Sequence:NP_032135.2Re-query CCDS DB by Nucleotide ID:NM_008109Re-query CCDS DB by Protein ID:NP_032135Link to BLAST:NP_032135.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032135.2 495 P43027 495 100% 0 0

Chromosomal Locations for CCDS 16958.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155941543 155942417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155944443 155945055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGAGACTCCCCAAACTCCTCACTCTTTTGCTGTGGCACCTGGCTTGGCTGGACCTGGAACTCATCTGCA
CTGTGCTGGGTGCCCCTGACTTAGGACAGAGAACCCCAGGGGCCAAGCCAGGGTTGACCAAAGCGGAGGC
CAAGGAGAGGCCACCCCTGGCCAGGAATGTCTTTAGGCCAGGGGGTCATATCTATGGTGTGGGGGCCACC
AATGCCAGGGCCAAGGGAAGCTCTGGGCAGACACAGGCCAAGAAGGATGAACCCAGAAAGATGCCCCCCA
GATCCGGTGGCCCTGAAACCAAGCCAGGACCCTCTTCCCAGACTAGACAGGCTGCAGCCCGGACTGTAAC
CCCAAAAGGACAGCTTCCTGGGGGCAAAGCATCTTCAAAAGCAGGATCTGCCCCCAGCTCCTTCCTGCTG
AAGAAGACCAGGGAGCCTGGGACCCCTCGAGAGCCCAAGGAGCCGTTCCGCCCGCCCCCCATCACACCCC
ACGAATACATGCTCTCCCTGTACAGGACGCTGTCCGATGCTGACAGAAAGGGAGGTAACAGCAGCGTGAA
GTTGGAGGCTGGCCTGGCCAACACCATCACCAGCTTTATTGACAAAGGGCAAGATGACCGAGGCCCTGCG
GTCAGGAAGCAGAGGTACGTGTTTGACATCAGTGCCTTGGAGAAGGATGGGCTGTTGGGGGCTGAACTGC
GGATCTTACGGAAGAAGCCCTTGGACGTGGCCAAGCCAGCGGTCCCCAGTAGCGGGCGGGTTGCCCAACT
GAAGCTGTCCAGCTGCCCCAGCGGCCGGCAGCCGGCAGCCTTGCTGGATGTGCGCTCCGTGCCAGGCCTG
GATGGATCTGGCTGGGAGGTGTTCGACATCTGGAAGCTCTTCCGAAATTTTAAGAACTCAGCGCAGCTGT
GCCTGGAGCTGGAGGCCTGGGAACGGGGCCGGGCCGTGGACCTCCGTGGCCTGGGCTTTGAACGCACTGC
CCGACAGGTCCACGAGAAAGCCTTGTTCCTAGTGTTTGGTCGTACCAAGAAACGGGACCTGTTCTTTAAT
GAGATTAAGGCCCGCTCTGGCCAGGATGACAAGACTGTGTATGAATATTTGTTCAGCCAGCGGCGGAAAC
GCCGGGCCCCATTGGCCAATCGCCAGGGCAAGCGACCCAGCAAGAACCTCAAGGCTCGCTGCAGTCGCAA
GGCCTTGCATGTCAACTTCAAGGACATGGGCTGGGACGACTGGATCATCGCACCTCTTGAGTATGAGGCC
TTCCACTGCGAAGGACTGTGTGAGTTCCCCTTGCGCTCCCACTTGGAGCCCACAAACCACGCAGTCATTC
AGACCCTAATGAACTCTATGGACCCTGAATCCACACCACCCACTTGTTGTGTGCCTACACGGCTGAGTCC
TATTAGCATCCTCTTCATCGACTCTGCCAACAACGTGGTGTATAAACAGTACGAGGACATGGTCGTGGAA
TCTTGTGGCTGCAGGTAG

Translation (495 aa):
MRLPKLLTLLLWHLAWLDLELICTVLGAPDLGQRTPGAKPGLTKAEAKERPPLARNVFRPGGHIYGVGAT
NARAKGSSGQTQAKKDEPRKMPPRSGGPETKPGPSSQTRQAAARTVTPKGQLPGGKASSKAGSAPSSFLL
KKTREPGTPREPKEPFRPPPITPHEYMLSLYRTLSDADRKGGNSSVKLEAGLANTITSFIDKGQDDRGPA
VRKQRYVFDISALEKDGLLGAELRILRKKPLDVAKPAVPSSGRVAQLKLSSCPSGRQPAALLDVRSVPGL
DGSGWEVFDIWKLFRNFKNSAQLCLELEAWERGRAVDLRGLGFERTARQVHEKALFLVFGRTKKRDLFFN
EIKARSGQDDKTVYEYLFSQRRKRRAPLANRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEA
FHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVE
SCGCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH