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Report for CCDS48502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48502.1 Public Mus musculus 10 Zc2hc1b 23 108 98 CCDS HistoryNCBI Gene:75122Re-query CCDS DB by CCDS ID:48502.1Re-query CCDS DB by GeneID:75122See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019954.5 ENSMUSP00000019954.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019954.5Link to Ensembl Protein Viewer:ENSMUSP00000019954.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000019954Re-query CCDS DB by Protein ID:ENSMUSP00000019954
Original member Current member NCBI NM_029172.1 NP_083448.1 Accepted alive Link to Nucleotide Sequence:NM_029172.1Link to Protein Sequence:NP_083448.1Re-query CCDS DB by Nucleotide ID:NM_029172Re-query CCDS DB by Protein ID:NP_083448Link to BLAST:NP_083448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083448.1 172 Q9D534 172 99.4186% 0 1

Chromosomal Locations for CCDS 48502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13150140 13150169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13153474 13153613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13167801 13167939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13168708 13168827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13171276 13171337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13177958 13177985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGGCTGAGGCACAGCTGCTTGTGGAAGATGGCAATCAGAAGTTATTTCCCTGTGAAGTCTGTGGGAGAT
GCTTTGCAACAGATGTTCTGGAAAGACATGGACCGATATGTAAAAAAGTATTCAACAAAAAACGCAAACC
CTTCAACTCCTTAAAGCAAAGATTACAAGGAACTGACATTCCCACTGTGGGTAAATCTCCTCAGCCCAAG
GTTCAGCCCGTAAGGAAATCTAACTGGAGACAGCAGCACGAGGATTTCATCAATACGATCCGATCAGCAA
AACAATTCACTCTAGCCATTAAAGAGGGCCGGCCCCTCCCACCTCCACCCCGTCCAACCTCCAACCCAGA
TTATATTCAATGCCCTTATTGTATGAGGAGGTTTAACGAAACCGCTGCCCAACGACATATTAATTTCTGC
AAAAATCAGACCTCTCGACCCGTCTTTGATCCAATCCAAATGGCAGCCAGACTGGTATCCAGAGCTCAGT
GTAAGGCCCAGGCAAGTCTCAAAAAATAA

Translation (172 aa):
MAEAQLLVEDGNQKLFPCEVCGRCFATDVLERHGPICKKVFNKKRKPFNSLKQRLQGTDIPTVGKSPQPK
VQPVRKSNWRQQHEDFINTIRSAKQFTLAIKEGRPLPPPPRPTSNPDYIQCPYCMRRFNETAAQRHINFC
KNQTSRPVFDPIQMAARLVSRAQCKAQASLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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