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Report for CCDS29933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29933.1 Public Mus musculus 19 Vax1 23 108 98 CCDS HistoryNCBI Gene:22326Re-query CCDS DB by CCDS ID:29933.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172821.3 ENSMUSP00000134642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172821.3Link to Ensembl Protein Viewer:ENSMUSP00000134642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172821Re-query CCDS DB by Protein ID:ENSMUSP00000134642
Original member Current member NCBI NM_009501.3 NP_033527.1 Accepted alive Link to Nucleotide Sequence:NM_009501.3Link to Protein Sequence:NP_033527.1Re-query CCDS DB by Nucleotide ID:NM_009501Re-query CCDS DB by Protein ID:NP_033527Link to BLAST:NP_033527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033527.1 338 Q2NKI2-1 338 100% 0 0

Chromosomal Locations for CCDS 29933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 59166187 59166774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59168471 59168658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 59169789 59170029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGTTCGGGAAACCAGACAAAATGGACGTCCGGTGCCACTCGGACACCGAGGCCGCCAGGGTCTCGAAGA
ACGCGCACAAGGAGAGCCGGGAGATCAAGGGCGCCGAGGGGAGCCTTCCGGCCGCCTTCCTCAAGGAGCC
GCAGGGCGCCTTTTCCGGGTCTGGCGCTTCGGAAGATTGTAACAAAAGTAAATCCAATTCCTCAGCGGAC
CCAGATTACTGTCGCCGGATCCTAGTCCGAGATGCCAAGGGGTCTATCCGAGAAATCATCCTGCCCAAAG
GCTTGGATCTGGACCGGCCCAAGAGGACTCGCACGTCCTTCACCGCGGAGCAGCTCTACAGGCTGGAGAT
GGAGTTCCAGCGTTGCCAATACGTGGTGGGCCGGGAGAGAACCGAGCTGGCTCGGCAGCTCAATCTCTCT
GAGACCCAGGTGAAGGTCTGGTTCCAGAATCGGCGGACTAAGCAGAAGAAGGACCAGGGCAAGGACTCGG
AGCTGCGCTCGGTGGTGTCGGAGACCGCCGCCACGTGCAGCGTGCTGCGGCTCTTGGAGCAAGGCCGCCT
GTTGTCGCCTCCCGGGCTGCCCGCCTTGCTGCCGCCCTGTGCCACTGGCGCTCTAGGCTCGGCGTTGCGC
GGGCCCAGCCTCCCGGCCCTGGGTGCAGGCGCTGCCGCGGGCTCCGCCGCTGCCGCCGCCGCTGCCGCCG
CCGCCACTGCCCCGGGTCCCGCAGGCGCGGCGTCCCAGCACCAGCCGGCCGTGGGCGGCGCTCCCGGCCC
AGGGCCTGCAGGGCCGGGAGGACTGCACGCGGGAGCACCGACTGCCAGCCACGGTCTCTTCAGCCTGCCG
GTGCCGTCGCTGCTAGGCTCTGTCGCCAGCCGCCTGTCCTCCGCCCCGTTGACGATGGCTGGTTCGCTAG
CCGGGAATTTGCAAGAACTCTCAGCCCGTTACCTGAGCTCCTCGGCCTTCGAGCCTTACTCCCGGACCAA
CAATAAAGAAGGGGCCGAGAAAAAAGCGCTGGACTGA

Translation (338 aa):
MFGKPDKMDVRCHSDTEAARVSKNAHKESREIKGAEGSLPAAFLKEPQGAFSGSGASEDCNKSKSNSSAD
PDYCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLS
ETQVKVWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGALGSALR
GPSLPALGAGAAAGSAAAAAAAAAATAPGPAGAASQHQPAVGGAPGPGPAGPGGLHAGAPTASHGLFSLP
VPSLLGSVASRLSSAPLTMAGSLAGNLQELSARYLSSSAFEPYSRTNNKEGAEKKALD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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