NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1823.1 Public Homo sapiens 2 SRBD1 24 110 108 CCDS HistoryNCBI Gene:55133Re-query CCDS DB by CCDS ID:1823.1Re-query CCDS DB by GeneID:55133See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1823.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263736.5 ENSP00000263736.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263736.5Link to Ensembl Protein Viewer:ENSP00000263736.4Re-query CCDS DB by Nucleotide ID:ENST00000263736Re-query CCDS DB by Protein ID:ENSP00000263736
Original member Current member NCBI NM_018079.5 NP_060549.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018079.5Link to Protein Sequence:NP_060549.4Re-query CCDS DB by Nucleotide ID:NM_018079Re-query CCDS DB by Protein ID:NP_060549Link to BLAST:NP_060549.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060549.4 995 Q8N5C6-1 995 100% 0 0

Chromosomal Locations for CCDS 1823.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 45389310 45389599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45392945 45393129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45413114 45413293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45418365 45418541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45419788 45419894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45476993 45477075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45488240 45488331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45546732 45546839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45547522 45547612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45551125 45551282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45553623 45553730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45562653 45562756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45573207 45573342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45574627 45574723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45579875 45580013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45581693 45581810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45585608 45585774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45599449 45599835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45601903 45602083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 45605362 45605441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2988 nt):
ATGTCATCATTGCCAAGAAGAGCGAAAGTACAGGTCCAGGATGTGGTACTGAAAGATGAATTTTCTTCAT
TCTCTGAGTTATCATCTGCCTCTGAAGAAGATGACAAGGAAGATAGTGCCTGGGAGCCCCAAAAGAAAGT
TCCCAGAAGCCGTAAACAGCCCCCTCCCAAGGAATCCAAACCAAAGAGGATGCCTCGGGTGAAGAAGAAT
GCCCCACAGATCAGTGATGGCTCAGAAGTCGTTGTTGTTAAGGAGGAGCTGAATAGCTCTGTGGCTATTG
CTGATACTGCTTTAGAAGACAGAAAAAATAAATTGGATACTGTACAGACTCTGAAAACAGCCAAGACAAA
ACAGAAATGTGCAGCGCAGCCACATACAGTTCGAAGGACTAAAAAGCTGAAAGTTGAAGAAGAAACCAGC
AAAGCCAGCAACTTAGAGGGTGAGAGTAATAGTTCAGAGACACCATCCACAAGCACTGTGTGGGGAGGTA
CATGCAAGAAGGAAGAGAATGACGATGACTTTACATTTGGTCAGTCCGCTTTAAAGAAAATCAAGACTGA
GACATATCCTCAGGGGCAGCCTGTCAAGTTTCCAGCAAATGCCAATAGTACTAAAGAGGAGGTGGAAATG
AATTGGGACATGGTACAGGTTTTATCTGAGAGAACTAATATTGAACCTTGGGTTTGTGCCAACATCATTC
GTCTCTTTAATGATGATAACACAATTCCCTTCATTATACGTTATAGAAAAGAGCTCATTAATAACCTTGA
TGCTGATTCCTTGAGAGAAGTTCAGCAAACCCTAGAAGAGCTACGGGCTGTTGCAAAGAAAGTTCATAGT
ACAATCCAGAAAATTAAGAAGGAAGGGAAGATGTCTGAGTGCTTGTTAAAAGCCATGCTGAATTGTAAAA
CTTTTGAAGAACTAGAACACGTGTCTGCTCCATATAAAACTGGAAGCAAAGGGACTAAAGCCCAGAGAGC
AAGACAGTTGGGCTTAGAAGGAGCAGCCAGGGCACTGCTTGAGAAACCAGGGGAGCTCAGTCTGCTATCG
TACATTAGGCCTGACGTTAAAGGGCTTTCAACGCTTCAGGATATTGAAATAGGAGTGCAGCATATTTTAG
CAGATATGATTGCTAAAGACAAAGACACGCTTGACTTCATTCGGAACTTGTGCCAGAAGAGACATGTTTG
TATCCAGTCATCTCTGGCAAAAGTATCCTCAAAAAAGGTAAATGAGAAAGATGTTGATAAGTTTCTGCTC
TACCAGCATTTTTCCTGCAACATAAGAAACATTCACCATCATCAGATTCTGGCAATTAACCGTGGAGAAA
ATTTGAAGGTACTGACGGTTAAGGTCAATATTTCTGATGGAGTGAAGGATGAATTCTGTAGGTGGTGCAT
CCAAAACAGGTGGAGACCACGTAGCTTTGCAAGGCCAGAGTTAATGAAGATCTTATATAATTCACTGAAT
GATTCCTTTAAACGCCTTATTTATCCTCTTCTCTGTAGAGAATTCAGAGCCAAACTAACATCAGATGCAG
AGAAGGAATCAGTAATGATGTTTGGACGGAACCTTCGTCAGCTCCTTTTAACAAGCCCTGTTCCAGGGCG
CACCTTAATGGGAGTGGATCCTGGTTATAAACATGGTTGCAAATTAGCTATAATTTCTCCTACTAGTCAG
ATACTTCATACTGATGTGGTTTACTTGCATTGTGGACAAGGCTTCCGAGAGGCGGAGAAAATAAAGACAC
TTTTGCTGAATTTCAACTGCAGCACAGTAGTGATTGGAAATGGAACTGCCTGCAGGGAAACAGAAGCTTA
CTTTGCTGACCTGATAATGAAGAATTATTTTGCACCACTGGATGTTGTTTACTGTATCGTCAGTGAAGCA
GGAGCATCAATCTACAGTGTCAGCCCTGAAGCTAACAAAGAGATGCCAGGGCTGGACCCTAATTTGAGAA
GTGCAGTTTCCATAGCAAGGCGTGTACAAGATCCATTAGCTGAGCTAGTGAAAATTGAGCCAAAGCACAT
TGGAGTTGGAATGTATCAGCATGACGTATCCCAGACTTTACTCAAGGCAACACTGGACAGTGTTGTAGAA
GAATGTGTCAGCTTTGTGGGAGTGGATATTAACATCTGTTCAGAAGTTTTGTTAAGGCATATTGCAGGAC
TCAATGCCAACAGGGCCAAAAATATTATTGAATGGCGAGAGAAAAATGGACCCTTTATCAACCGAGAACA
GCTGAAGAAAGTGAAAGGGCTGGGCCCAAAATCCTTCCAACAGTGTGCTGGCTTCATCAGAATCAACCAG
GATTATATCCGAACGTTTTGCAGTCAGCAAACTGAAACTTCAGGCCAAATTCAAGGAGTTGCTGTGACAT
CTTCAGCAGACGTTGAGGTCACAAATGAGAAGCAGGGCAAAAAGAAGAGCAAAACTGCAGTGAATGTTTT
ACTGAAGCCAAATCCTTTGGACCAAACTTGTATTCATCCAGAATCATATGACATAGCAATGAGGTTTTTG
TCATCCATTGGAGGGACACTGTATGAGGTTGGAAAGCCTGAAATGCAACAAAAAATAAATTCATTCCTTG
AAAAGGAAGGAATGGAGAAAATTGCAGAAAGATTGCAAACAACAGTACACACCTTACAGGTCATCATAGA
TGGTCTCAGCCAGCCTGAAAGCTTTGACTTTCGAACAGATTTTGATAAACCTGATTTCAAGAGAAGCATA
GTATGCCTGGAAGATCTGCAGATTGGGACAGTTCTTACAGGCAAAGTTGAGAATGCCACTCTCTTTGGAA
TTTTTGTGGATATAGGAGTGGGGAAATCTGGGCTGATTCCCATACGAAATGTAACAGAAGCAAAACTTTC
AAAAACAAAGAAGAGAAGAAGCCTTGGACTGGGCCCCGGAGAAAGAGTGGAAGTCCAAGTACTCAACATT
GACATCCCCCGATCTAGGATTACTCTGGACCTCATTCGGGTGTTATGA

Translation (995 aa):
MSSLPRRAKVQVQDVVLKDEFSSFSELSSASEEDDKEDSAWEPQKKVPRSRKQPPPKESKPKRMPRVKKN
APQISDGSEVVVVKEELNSSVAIADTALEDRKNKLDTVQTLKTAKTKQKCAAQPHTVRRTKKLKVEEETS
KASNLEGESNSSETPSTSTVWGGTCKKEENDDDFTFGQSALKKIKTETYPQGQPVKFPANANSTKEEVEM
NWDMVQVLSERTNIEPWVCANIIRLFNDDNTIPFIIRYRKELINNLDADSLREVQQTLEELRAVAKKVHS
TIQKIKKEGKMSECLLKAMLNCKTFEELEHVSAPYKTGSKGTKAQRARQLGLEGAARALLEKPGELSLLS
YIRPDVKGLSTLQDIEIGVQHILADMIAKDKDTLDFIRNLCQKRHVCIQSSLAKVSSKKVNEKDVDKFLL
YQHFSCNIRNIHHHQILAINRGENLKVLTVKVNISDGVKDEFCRWCIQNRWRPRSFARPELMKILYNSLN
DSFKRLIYPLLCREFRAKLTSDAEKESVMMFGRNLRQLLLTSPVPGRTLMGVDPGYKHGCKLAIISPTSQ
ILHTDVVYLHCGQGFREAEKIKTLLLNFNCSTVVIGNGTACRETEAYFADLIMKNYFAPLDVVYCIVSEA
GASIYSVSPEANKEMPGLDPNLRSAVSIARRVQDPLAELVKIEPKHIGVGMYQHDVSQTLLKATLDSVVE
ECVSFVGVDINICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFIRINQ
DYIRTFCSQQTETSGQIQGVAVTSSADVEVTNEKQGKKKSKTAVNVLLKPNPLDQTCIHPESYDIAMRFL
SSIGGTLYEVGKPEMQQKINSFLEKEGMEKIAERLQTTVHTLQVIIDGLSQPESFDFRTDFDKPDFKRSI
VCLEDLQIGTVLTGKVENATLFGIFVDIGVGKSGLIPIRNVTEAKLSKTKKRRSLGLGPGERVEVQVLNI
DIPRSRITLDLIRVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH