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Report for CCDS30457.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30457.1 Public Mus musculus X Trpc5 23 108 98 CCDS HistoryNCBI Gene:22067Re-query CCDS DB by CCDS ID:30457.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30457.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040184.3 ENSMUSP00000049063.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040184.3Link to Ensembl Protein Viewer:ENSMUSP00000049063.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000040184Re-query CCDS DB by Protein ID:ENSMUSP00000049063
Original member Current member NCBI NM_009428.3 NP_033454.1 Accepted alive Link to Nucleotide Sequence:NM_009428.3Link to Protein Sequence:NP_033454.1Re-query CCDS DB by Nucleotide ID:NM_009428Re-query CCDS DB by Protein ID:NP_033454Link to BLAST:NP_033454.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033454.1 975 Q9QX29 975 100% 0 0

Chromosomal Locations for CCDS 30457.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 144382498 144383193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144385894 144385983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144387853 144387894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144388149 144388352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144411612 144411807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144419531 144419853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144425264 144425403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144427485 144427821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144480960 144481481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 144523464 144523841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGGCCCAGCTGTACTACAAGAAGGTCAATTACTCACCATACAGAGATCGCATCCCCCTCCAAATCGTGA
GGGCTGAGACTGAGCTGTCTGCTGAGGAGAAAGCCTTCCTTAGTGCTGTGGAGAAGGGGGACTATGCCAC
AGTGAAGCAGGCACTGCAGGAGGCCGAGATCTACTACAATGTCAACATCAACTGCATGGATCCTTTGGGC
AGGAGCGCCCTGCTCATTGCCATTGAGAATGAGAACTTGGAGATCATGGAGCTACTGCTGAACCACAGTG
TGTATGTGGGCGATGCATTACTCTACGCCATCCGCAAGGAGGTGGTAGGAGCTGTGGAACTTCTGCTTAG
CTACAGGAAGCCCAGTGGAGAGAAGCAGGTTCCCACGCTGATGATGGACACCCAGTTCTCTGAGTTCACA
CCAGACATCACTCCCATTATGTTGGCAGCCCACACCAACAACTATGAAATCATCAAATTGCTTGTCCAAA
AGAGGGTCACTATCCCAAGGCCCCACCAGATCCGCTGCAACTGTGTGGAGTGTGTATCCAGTTCGGAGGT
AGATAGTCTACGTCATTCTAGGTCCCGACTGAATATATACAAGGCTCTGGCAAGCCCCTCGCTCATTGCC
TTATCAAGCGAGGACCCCATCCTCACGGCCTTTCGGCTGGGCTGGGAACTCAAGGAGCTGAGCAAAGTGG
AAAATGAGTTCAAGGCTGAGTACGAGGAACTTTCCCAGCAATGTAAGCTCTTTGCCAAGGATCTCTTGGA
CCAAGCTCGGAGCTCCAGAGAACTGGAGATCATCCTCAACCATCGAGATGACCACAGTGAAGAACTTGAC
CCACAGAAGTATCATGACCTGGCCAAGCTGAAGGTGGCAATCAAATATCACCAGAAAGAGTTTGTCGCTC
AGCCAAACTGCCAACAATTGCTAGCCACCTTGTGGTACGATGGCTTCCCTGGATGGCGGAGAAAACACTG
GGTAGTCAAGCTTCTGACCTGCATGACCATTGGATTCCTGTTTCCTATGCTGTCCATAGCCTATCTGATC
TCACCCAGAAGCAACCTTGGGCTTTTCATCAAGAAACCCTTTATTAAGTTCATCTGCCACACAGCATCCT
ATCTGACCTTCCTCTTCATGCTTCTCCTGGCTTCTCAACATATCGTCAGAACAGACCTCCATGTTCAAGG
ACCTCCCCCAACTGTTGTGGAATGGATGATACTGCCTTGGGTTCTAGGTTTCATTTGGGGGGAGATAAAG
GAAATGTGGGATGGTGGATTCACGGAATACATCCATGATTGGTGGAACCTGATGGATTTTGCAATGAACT
CCCTCTACCTGGCAACTATTTCCTTGAAGATCGTGGCCTATGTCAAGTATAATGGTTCTCGTCCAAGGGA
AGAATGGGAAATGTGGCACCCGACTCTGATTGCAGAAGCACTCTTCGCAATATCCAACATTTTAAGTTCC
TTGCGTCTCATATCCTTGTTCACAGCCAACTCCCATTTAGGGCCTCTGCAGATCTCTTTGGGACGAATGC
TGCTTGATATACTCAAATTTCTCTTTATCTACTGCCTAGTACTACTGGCTTTTGCCAACGGACTGAACCA
GCTTTACTTTTACTATGAGACCAGAGCTATTGATGAACCTAACAACTGCAAGGGGATCCGATGTGAAAAA
CAGAACAACGCCTTCTCCACGCTCTTTGAAACCCTTCAGTCGCTCTTCTGGTCTGTCTTTGGCCTCCTAA
ATCTCTATGTTACCAATGTGAAGGCCCGACATGAGTTCACTGAGTTTGTGGGAGCTACGATGTTTGGGAC
ATACAACGTCATCTCCCTGGTAGTGCTGCTGAATATGCTCATCGCCATGATGAACAACTCCTACCAGCTC
ATTGCCGATCATGCTGATATTGAGTGGAAGTTTGCGAGAACAAAGCTCTGGATGAGTTACTTTGATGAAG
GTGGCACCTTACCACCTCCTTTCAACATTATTCCCAGCCCCAAATCATTTCTCTATCTTGGCAACTGGTT
CAACAACACCTTCTGTCCCAAAAGAGACCCTGATGGAAGACGAAGGAGGCACAACTTGAGAAGCTTCACA
GAACGTCATGCTGACAGCCTGATACAAAATCAACATTATCAGGAAGTTATCAGAAATTTAGTCAAGAGAT
ATGTGGCTGCAATGATAAGAAACTCCAAAACAAATGAGGGGCTAACAGAAGAAAATTTTAAGGAATTAAA
GCAGGACATTTCCAGCTTTCGATATGAAGTGCTTGACCTCTTGGGAAACAGGAAACATCCAAGAAGAAGC
CTCTCCACCAGCAGTGCTGATTTCTCTCAAAGGGATGATACCAATGACGGCAGTGGTGGGGCTCGGGCCA
AGTCTAAGAGTGTCTCTTTCAATGTAGGCTGCAAGAAAAAGGCCTGTCACGGTGCACCGCTCATCAGAAC
CGTGCCAAGAGCTAGTGGCGCCCAAGGAAAGCCAAAATCCGAGTCGTCGAGCAAACGGTCCTTCATGGGT
CCGTCTTTCAAGAAATTGGGTCTCTTCTTCTCCAAGTTCAATGGTCAAACATCTGAACCTACTTCGGAGC
CAATGTACACAATCTCTGATGGCATCGCACAGCAGCATTGTATGTGGCAGGACATCCGCTATTCTCAGAT
GGAGAAAGGGAAGGCAGAGGCCTGTTCTCAAAGTCAGATGAACCTTGGCGAGGTAGAGCTAGGTGAAATC
CGGGGGGCTGCTGCTCGGAGCAGTGAGTGCCCCCTAGCCTGTTCCAGCTCCCTTCACTGTGCATCCGGCA
TCTGCTCCTCAAATTCGAAACTTTTGGACTCGTCAGAGGACGTATTTGAAACTTGGGGAGAGGCTTGTGA
CTTGCTCATGCACAAATGGGGTGATGGACAGGAAGAACAAGTTACAACTCGGCTCTAA

Translation (975 aa):
MAQLYYKKVNYSPYRDRIPLQIVRAETELSAEEKAFLSAVEKGDYATVKQALQEAEIYYNVNINCMDPLG
RSALLIAIENENLEIMELLLNHSVYVGDALLYAIRKEVVGAVELLLSYRKPSGEKQVPTLMMDTQFSEFT
PDITPIMLAAHTNNYEIIKLLVQKRVTIPRPHQIRCNCVECVSSSEVDSLRHSRSRLNIYKALASPSLIA
LSSEDPILTAFRLGWELKELSKVENEFKAEYEELSQQCKLFAKDLLDQARSSRELEIILNHRDDHSEELD
PQKYHDLAKLKVAIKYHQKEFVAQPNCQQLLATLWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLI
SPRSNLGLFIKKPFIKFICHTASYLTFLFMLLLASQHIVRTDLHVQGPPPTVVEWMILPWVLGFIWGEIK
EMWDGGFTEYIHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEALFAISNILSS
LRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFYYETRAIDEPNNCKGIRCEK
QNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFVGATMFGTYNVISLVVLLNMLIAMMNNSYQL
IADHADIEWKFARTKLWMSYFDEGGTLPPPFNIIPSPKSFLYLGNWFNNTFCPKRDPDGRRRRHNLRSFT
ERHADSLIQNQHYQEVIRNLVKRYVAAMIRNSKTNEGLTEENFKELKQDISSFRYEVLDLLGNRKHPRRS
LSTSSADFSQRDDTNDGSGGARAKSKSVSFNVGCKKKACHGAPLIRTVPRASGAQGKPKSESSSKRSFMG
PSFKKLGLFFSKFNGQTSEPTSEPMYTISDGIAQQHCMWQDIRYSQMEKGKAEACSQSQMNLGEVELGEI
RGAAARSSECPLACSSSLHCASGICSSNSKLLDSSEDVFETWGEACDLLMHKWGDGQEEQVTTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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