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Report for CCDS26121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26121.1 Public Mus musculus 12 Itpk1 23 108 98 CCDS HistoryNCBI Gene:217837Re-query CCDS DB by CCDS ID:26121.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046518.11 ENSMUSP00000046027.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046518.11Link to Ensembl Protein Viewer:ENSMUSP00000046027.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046518Re-query CCDS DB by Protein ID:ENSMUSP00000046027
Original member Current member NCBI NM_172584.3 NP_766172.1 Accepted alive Link to Nucleotide Sequence:NM_172584.3Link to Protein Sequence:NP_766172.1Re-query CCDS DB by Nucleotide ID:NM_172584Re-query CCDS DB by Protein ID:NP_766172Link to BLAST:NP_766172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766172.1 419 Q8BYN3 419 100% 0 0

Chromosomal Locations for CCDS 26121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102570126 102570484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102573922 102574084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102579105 102579172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102584287 102584452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102587896 102587936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102588464 102588562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102606089 102606206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102623300 102623425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102675443 102675467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102704722 102704816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGCAGACCTTCCTGAAAGGGAAGAGAGTTGGCTACTGGCTGAGCGAGAAGAAAGTCAAGAAGCTCAATT
TCCAGGCCTTCGCGGAGCTGTGCAGGAAGCGAGGGATAGAAGTCGTGCAGCTGAACCTCAGCAGACCGAT
TGAGGAGCAGGGCCCCCTGGACGTCATCATCCACAAGCTGACCGATGTCATCCTCGAGGCAGACCAGAAT
GACAGCCAGTCCCTGGAATTGGTGCACAGGTTCCAAGAGTACATCGATGCTCACCCTGAGACCATCGTCT
TGGATCCCCTCCCCGCCATCAGGACCCTGTTAGACCGTTCCAAGTCCTACGAACTTATCCGAAAGATCGA
GGCCTACATGAAAGATGACAGAATCTGCTCGCCGCCTTTCATGGAGCTCACGAGCCTGTGTGGGGAGGAC
ACCATGAGGCTGCTGGAGCAGAACGGCCTGGCCTTCCCCTTCATTTGCAAAACCAGAGTGGCTCATGGAA
CCAACTCTCATGAGATGGCTATTGTGTTCAACCAAGAGGGCCTGAATGCCATCCAGCCTCCCTGTGTGGT
CCAGAACTTCATCAACCACAATGCTGTCCTGTACAAGGTGTTTGTGGTGGGCGAGTCCTACACAGTGGTC
CAGAGACCCTCACTCAAGAACTTCTCTGCGGGCACATCAGATCGTGAGTCCATCTTCTTCAACAGCCACA
ATGTGTCAAAGCCGGAGTCTTCATCAGTCCTCACTGAGCTGGACAAGATCGAGGGTGTGTTCGAACGGCC
AAGCGATGAGGTTATCCGGGAGCTGTCCCGGGCTCTGCGGCAGGCGCTGGGAGTGTCACTGTTTGGAATT
GACATCATCATTAACAACCAGACCGGGCAGCATGCAGTCATCGATGTCAATGCCTTCCCAGGCTATGAAG
GAGTGAGTGAGTTCTTTACCGACCTCCTGAACCACATTGCCACAGTTCTGCAAGGCCAGAGCACGGGAGG
AGCTGCCACGGAGGAAGTGGCCCCGCTAAGGCACAACAGGCTCCTGGCGGAACCGGCAGGCAGCCTGGCT
GGGGAGCGGACGTGCAGTGCCAGCCCTGGCTGCTGTGGCAGCATGAAGGGCCAGGACACACCCTGGAAGA
CTGAGACCGAAGCAGGCAACATGGGCGCTGGTGCTTCCGCCAAGCTGCCGCACCAGAGACTTGGCTGCAC
CACTGGCGTATCACCCAGCTTCCAGCAGCACTGTGTGGCCTCTCTGGCCACCAAGGCTTCCTCACAGTAG

Translation (419 aa):
MQTFLKGKRVGYWLSEKKVKKLNFQAFAELCRKRGIEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQN
DSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMKDDRICSPPFMELTSLCGED
TMRLLEQNGLAFPFICKTRVAHGTNSHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVV
QRPSLKNFSAGTSDRESIFFNSHNVSKPESSSVLTELDKIEGVFERPSDEVIRELSRALRQALGVSLFGI
DIIINNQTGQHAVIDVNAFPGYEGVSEFFTDLLNHIATVLQGQSTGGAATEEVAPLRHNRLLAEPAGSLA
GERTCSASPGCCGSMKGQDTPWKTETEAGNMGAGASAKLPHQRLGCTTGVSPSFQQHCVASLATKASSQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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