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Report for CCDS24943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24943.1 Public Mus musculus 11 Alox12e 23 108 98 CCDS HistoryNCBI Gene:11685Re-query CCDS DB by CCDS ID:24943.1Re-query CCDS DB by GeneID:11685See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019051.2 ENSMUSP00000019051.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019051.2Link to Ensembl Protein Viewer:ENSMUSP00000019051.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000019051Re-query CCDS DB by Protein ID:ENSMUSP00000019051
Original member Current member NCBI NM_145684.2 NP_663717.1 Accepted alive Link to Nucleotide Sequence:NM_145684.2Link to Protein Sequence:NP_663717.1Re-query CCDS DB by Nucleotide ID:NM_145684Re-query CCDS DB by Protein ID:NP_663717Link to BLAST:NP_663717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663717.1 662 P55249 662 100% 0 0

Chromosomal Locations for CCDS 24943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 70315871 70316050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70316170 70316337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70316446 70316545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70317586 70317708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70317807 70317976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70318171 70318257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70319634 70319843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70319941 70320084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70320730 70320890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70321036 70321139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70321228 70321350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70321432 70321513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70321685 70321886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 70322322 70322456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGTCAAGTACAAGATCCTCGTAGCCACTGGAGACTCGGTTTTTGCGGGCTCCGCCAACCTGGTGCATC
TGTGGCTGGTGGGCGAGCATGGAGAGGCGGACCTTGGGAAGCAGCTGCGGCCACTGCTGGGAAGGAAGAC
AGAGCTGGAGGTCGACGTCCCCTTGCATCTAGGGCGCCTCCTGGCGGTGAAGCTGCGCAAACAGAAAGGC
CTATTGGATTCTGACTGGTTCTGCAAGAGCATCACTGTGCAGGGCCCTGGGACCCAAGGAGAAGCCTTTT
TCCCCTGCTACAGTTGGGTGCAGGGCAAGGAGACTATCTGCCTAACCGAGGGCACTGCCCTGAAGGTAAC
TGATGACACTCAGAACCTGTTTAGGAAGTATCGAGAGCAGGAGCTGGAGAACAGAAGGAATGTGTATCGG
TGGGGCTCCTGGAAGGAGGGATTAATCCTGCCTATAGCAGGGAGTACTGAACGGGACCTCCCCCGGAACC
AGAGATTCATGAAGGATAAGGATTTAGATTTTTCCCTCTCTCTGGTCAAAGAGTTGAAGAACTTTGCTAT
TAAGGGGACTCTAGATTTTGTAAGTCGTGTACAAAAGCTGGAAGATTACCAGAAAGTATTCCCACATACA
AAGACTGCTCTGCCTGAGCGGGTCCGTGGTTCCTGGAAGGAAGATGCTCTCTTTGGGTACCAGTTCCTCA
ACGGTGCAAACCCCATGCTCCTGAGGCGGTCCATGCGCCTTCCAGCCCGGCTGGTCCTGCCTCCAGGGAT
GGAAGACGTACAGACCCAGCTGGAGAAGGAGCTCAAGGCTGGATCTCTGTTCGAAGTTGATTTCTCCCTG
CTGGATGGAGTCAAACCTAACATCATCATTTTTAAGCAGCAATATGTGACAGCCCCTTTGGTCATGCTGA
AACTACAGCCCGATGGGAGGCTCTTACCCATGGTCATCCAGCTCCAGCCACCACGACACGGATGTCCCCC
GCCTCTGCTCTTCTTGCCCTCAGATCCCCCCATGGCCTGGCTCTTGGCCAAGATCTGGGTCCGAAGCTCT
GACTTCCAACTGCACCAGTTACAGTCACATCTGCTGAGGGGACACCTCATGGCCGAGGTTATTTCTGTGG
CCACAATGAGGAGTTTACCCAGCCTGCACCCCATATACAAGCTCCTTGCCCCCCACTTTCGATACACCAT
GGAGATCAACACCCTGGCACGGAATAATCTTGTCTCCGAATGGGGAATTTTTGACCTGGTGGTGAGCACG
GGGAGCGGAGGCCATGTGGACATTCTCCAGAGAGCCACGTCGTGTTTGACCTACCGCTCCTTTTGCCCTC
CGGATGACTTGGCTGACCGTGGACTCGTGGGGGTGAAATCTTCTCTGTATGCCCAGGATGCCCTCAGGCT
GTGGGAGATCATCAGTCGGTATGTGGAAAGGATGGTTGAGCTTTTCTACAGGAGTGACACCGATGTGAAG
GAGGACCCGGAGCTGCAGGTCTGGTGCCGCGAGGTCACTGAGGTTGGACTGCTTGGAGCCCAGGACCGAG
GGTTCCCCCTGTCCTTAGAGTCCCGGGCTGAGCTGTGCCGCTTTGTCGCTATGTGCATCTTCACGTGCAC
TGGTCAGCACGCATCTACACATCTGGGTCAGCTGGACTGGTATGCCTGGATCCCAAATGGCCCATGCACC
ATGCGGAAGCCCCCACCCATCTCCAAGGATGTGACAGAGAGGGACATTGTGGACTCGTTGCCTTGCCTTC
AGCAGGCACGGATGCAGATAACAGTCACCAAGTTCCTTGGCAGACGCCAGCCTGTCATGGTGGCCCTGGG
GCAGCATAAAGAGGAGTATTTCTCAGGCCCCAGGCCCCGGGATGTGCTGAAGCAATTCCAGGAGGAGCTG
GCTATCATGGACAAGGAGATTGAGGTCCGGAATGCAAGCCTGGACCTGCCCTATGAGTACCTCCGACCCA
GCCTGGTGGAAAACAGTGTGACCATCTGA

Translation (662 aa):
MVKYKILVATGDSVFAGSANLVHLWLVGEHGEADLGKQLRPLLGRKTELEVDVPLHLGRLLAVKLRKQKG
LLDSDWFCKSITVQGPGTQGEAFFPCYSWVQGKETICLTEGTALKVTDDTQNLFRKYREQELENRRNVYR
WGSWKEGLILPIAGSTERDLPRNQRFMKDKDLDFSLSLVKELKNFAIKGTLDFVSRVQKLEDYQKVFPHT
KTALPERVRGSWKEDALFGYQFLNGANPMLLRRSMRLPARLVLPPGMEDVQTQLEKELKAGSLFEVDFSL
LDGVKPNIIIFKQQYVTAPLVMLKLQPDGRLLPMVIQLQPPRHGCPPPLLFLPSDPPMAWLLAKIWVRSS
DFQLHQLQSHLLRGHLMAEVISVATMRSLPSLHPIYKLLAPHFRYTMEINTLARNNLVSEWGIFDLVVST
GSGGHVDILQRATSCLTYRSFCPPDDLADRGLVGVKSSLYAQDALRLWEIISRYVERMVELFYRSDTDVK
EDPELQVWCREVTEVGLLGAQDRGFPLSLESRAELCRFVAMCIFTCTGQHASTHLGQLDWYAWIPNGPCT
MRKPPPISKDVTERDIVDSLPCLQQARMQITVTKFLGRRQPVMVALGQHKEEYFSGPRPRDVLKQFQEEL
AIMDKEIEVRNASLDLPYEYLRPSLVENSVTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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