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Report for CCDS23843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23843.1 Public Mus musculus 10 Slc35f1 23 108 98 CCDS HistoryNCBI Gene:215085Re-query CCDS DB by CCDS ID:23843.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105473.2 ENSMUSP00000101113.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105473.2Link to Ensembl Protein Viewer:ENSMUSP00000101113.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105473Re-query CCDS DB by Protein ID:ENSMUSP00000101113
Original member Current member NCBI NM_178675.4 NP_848790.2 Accepted alive Link to Nucleotide Sequence:NM_178675.4Link to Protein Sequence:NP_848790.2Re-query CCDS DB by Nucleotide ID:NM_178675Re-query CCDS DB by Protein ID:NP_848790Link to BLAST:NP_848790.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848790.2 408 Q8BGK5 408 100% 0 0

Chromosomal Locations for CCDS 23843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 52690997 52691169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52933092 52933267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53021844 53021971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53062451 53062610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53073454 53073610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53077897 53077949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53089338 53089492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 53108148 53108372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGATTCCCCCCGAGCCTCCGCAGCCCCAACTGCAGCCACCACCTCCACCGGCCCCGCCGAACCATGTGG
TGACCACCATCGAGAACCTGCCAGCTGAGGGCAGCGGCGGCGTGAGCCTGTCCGCCTCCTCCCGGGCTAG
CATGCGCCAGAGGATCCGCAAAGTGCTGAACAGGGAGATGTTAATCTCTGTGGCTTTGGGTCAAGTGTTA
TCCCTTCTCGTTTGTGGAATTGGCTTGACGAGCAAGTACCTGGCAGAGGATTTTCATGCGAACACACCAG
TCTTCCAGAGCTTTCTGAACTACATCCTCCTCTTCTTGGTATACACCACCACCCTAGCTGTCCGACAAGG
AGAAGAAAACCTCCTGGCAATTTTACGACGAAGATGGTGGAAGTATATGATCCTTGGACTCATAGACTTG
GAAGCTAATTACCTGGTGGTCAAGGCTTACCAGTACACAACTCTGACCAGTGTCCAGCTCCTGGACTGTT
TTGTGATCCCGGTGGTGATTTTGCTCTCCTGGTTCTTCCTGCTGATCCGGTACAAGGCTGTGCATTTCAT
CGGCATCGTAGTCTGCATCCTGGGTATGGGCTGCATGGTGGGAGCGGATGTGCTCGTGGGAAGGCACCAG
GGAGCAGGAGAAAATAAGCTGGTAGGAGACCTTCTGGTCTTAGGAGGAGCCACCCTGTACGGGATCTCAA
ATGTCTGGGAAGAATCCATTATCCGAACCCTGAGCCGTGTGGAGTTCCTGGGAATGATTGGTCTCTTTGG
TGCATTTTTCAGTGGAATTCAATTAGCCATCATGGAACACAAGGAACTGTTAAAGGTACCATGGGATTGG
CAAATAGGACTGCTCTATGTTGGCTTTAGTGCCTGCATGTTTGGTCTCTACAGCTTTATGCCAGTTGTCA
TAAAGAAAACGAGTGCCACCTCGGTCAACCTTTCTCTGCTCACAGCAGATCTGTACAGCCTGTTCTGTGG
ACTCTTTCTCTTCCACTACAAGTTTTCAGGTCTTTACCTCCTGTCTTTCTTCACCATCCTCATCGGGCTG
GTGCTGTATTCCTCCACCTCTACATACATAGCCCAGGATCCCCGAGTGTACAAGCAGTTCCGCAATCCTT
CAGGACCTGTCGTGGACTTACCCAGCACGGCTCAGGTAGAGCCTTCAGTCACCTACACCAGCCTGGGCCA
GGAGACAGAAGAAGAGCCCCATGTACGTGTGGCCTAG

Translation (408 aa):
MIPPEPPQPQLQPPPPPAPPNHVVTTIENLPAEGSGGVSLSASSRASMRQRIRKVLNREMLISVALGQVL
SLLVCGIGLTSKYLAEDFHANTPVFQSFLNYILLFLVYTTTLAVRQGEENLLAILRRRWWKYMILGLIDL
EANYLVVKAYQYTTLTSVQLLDCFVIPVVILLSWFFLLIRYKAVHFIGIVVCILGMGCMVGADVLVGRHQ
GAGENKLVGDLLVLGGATLYGISNVWEESIIRTLSRVEFLGMIGLFGAFFSGIQLAIMEHKELLKVPWDW
QIGLLYVGFSACMFGLYSFMPVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGLYLLSFFTILIGL
VLYSSTSTYIAQDPRVYKQFRNPSGPVVDLPSTAQVEPSVTYTSLGQETEEEPHVRVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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